当前解析结果
SmilChr08G003756| 统一新 Gene ID | SmilChr08G003756 |
|---|---|
| 名称 | SmilChr08G003756 |
| 描述 | uncharacterized SmilChr08G003756 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 42770992 - 42773447 / - |
| NCBI Gene ID | LOC130998501 |
|---|---|
| GeneID | 130998501 |
| locus_tag | - |
| NCBI Name | LOC130998501 |
| 原始查询 | SmilChr08G003756 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0315200; species=rice; confidence=weak |
| 产物 | hit=Os08g0315200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os08g0315200- identity=36.7; qcov=0.258; evalue=8.86e-25; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998501 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779901.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779901.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057779901.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057779901.1 |
| 5 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057779901.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:42770999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B71,B93,B94,C84 |
Chr8:42771004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr8:42771015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:42771016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B105,B137,C35 |
Chr8:42771026 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B125 |
Chr8:42771026 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B125 |
Chr8:42771623 |
G |
A |
EMS_canonical_SNV | stop_gained | 14 | B113,B124,B139,B18,B24,B26,B43,B57,C37,C4,C67,C74,D5,D7 |
Chr8:42771631 |
A |
AGT |
2bp_insertion | frameshift_variant | 1 | B92 |
Chr8:42771631 |
A |
AGT |
2bp_insertion | CDS_variant | 1 | B92 |
Chr8:42771638 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B103,B131,B32,B53,B61 |
Chr8:42771638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B131,B32,B53,B61 |
Chr8:42771685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779901.1PF19259
Ty3_capsid 38-199 aa
PF03732
PEG10_N-capsid 39-117 aa
PF00098
zf-CCHC 298-314 aa
PF08284
RVP_2 373-500 aa
PF13650
Asp_protease_2 394-481 aa
PF13975
gag-asp_proteas 394-483 aa
PF30863
PRO_PEG10-RTL1 403-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779901.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 38 | 199 | 4.4e-09 | 36.8 | Ty3 transposon capsid-like protein |
XP_057779901.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 39 | 117 | 1.4e-10 | 42.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057779901.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 298 | 314 | 6.5e-06 | 26.7 | Zinc knuckle |
XP_057779901.1 |
Pfam | PF08284 |
RVP_2 | Domain | 373 | 500 | 1.8e-27 | 96.5 | Retroviral aspartyl protease |
XP_057779901.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 394 | 481 | 2.2e-10 | 41.8 | Aspartyl protease |
XP_057779901.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 394 | 483 | 7.4e-11 | 43.2 | gag-polyprotein putative aspartyl protease |
XP_057779901.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 403 | 501 | 1.1e-11 | 45.8 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。