Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003803`

染色体: Chr08 坐标: 43970177-43974024 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003803`
名称	SmilChr08G003803
描述	uncharacterized SmilChr08G003803
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	43970177 - 43974024 / `-`

ID 对照

NCBI Gene ID	`LOC130997154`
GeneID	`130997154`
locus_tag	`-`
NCBI Name	`LOC130997154`
原始查询	`SmilChr08G003803`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsBGLU1; symbol=OsBGLU1; hit=Os03g0749300; species=rice; confidence=high
产物	OsBGLU1; symbol=OsBGLU1; hit=Os03g0749300; species=rice; confidence=high
Arabidopsis	`AT5G20950` (AT5G20950) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832220] identity=72.3; qcov=0.997; evalue=0; confidence=high
Rice	`Os03g0749300` (OsBGLU1) - identity=73.2; qcov=0.987; evalue=0; confidence=high
GO	GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C)
InterPro	-
eggNOG	-
NR	GeneID:130997154

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057778396.1`
2	Lysosome	溶酶体	0.40000	`XP_057778396.1`
3	Nucleus	细胞核	0.00000	`XP_057778396.1`
4	Chromosome	染色体	0.00000	`XP_057778396.1`
5	Centromere	着丝粒	0.00000	`XP_057778396.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:43970373`	`G`	`GAC`	2bp_insertion	frameshift_variant	1	C30
`Chr8:43970373`	`G`	`GAC`	2bp_insertion	CDS_variant	1	C30
`Chr8:43970544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B6,B62,C14,C8
`Chr8:43970698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A25,B24,B34
`Chr8:43970910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr8:43970934`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,C14,C8
`Chr8:43971009`	`CGA`	`C`	2bp_deletion	frameshift_variant	2	B120,C65
`Chr8:43971009`	`CGA`	`C`	2bp_deletion	CDS_variant	2	B120,C65
`Chr8:43971247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:43971277`	`A`	`AT`	1bp_insertion	frameshift_variant	1	C48
`Chr8:43971277`	`A`	`AT`	1bp_insertion	CDS_variant	1	C48
`Chr8:43971279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778396.1

623 aa

312

623

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 44-371 aa PF01915 Glyco_hydro_3_C 408-616 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778396.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	44	371	4.7e-67	227.4	Glycosyl hydrolase family 3 N terminal domain
`XP_057778396.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	408	616	3.2e-41	142.2	Glycosyl hydrolase family 3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922413.1
CAAAATTCAACAAACAAACAAACTTGTCCGTATACATAATAAACCCACTGTCTCATGTCATTGATCCCAACTTGAGACTTGAGAGGGGAAATTTTCCTCTCTCTTTCTCTCTCTAGCAGTGACCACCGACTTCACTTGAGTGTCCTCACCGGTATAATGATGGGTAGAGCTGTGGTTGTGTTGCTGTGGTGGTGGATTTGGGCAGCAAATGCAGATTACACAATATACCAAGATCCGAAGCAGGCAGTTGGGAGGAGAGT...

CDS

1 records

下载 CDS FASTA

LOC130997154
ATGATGGGTAGAGCTGTGGTTGTGTTGCTGTGGTGGTGGATTTGGGCAGCAAATGCAGATTACACAATATACCAAGATCCGAAGCAGGCAGTTGGGAGGAGAGTGAAGGACCTCTTAAGCAGGATGAGTCTCCAAGAAAAGATCGGCCAAATGACGCAAATCGACCGCCTCGTAGCATCCGCCCATGTTCTCAACAAGTACTACATAGGCAGCGTGTTGAGCGGCGGAGGCAGCGTTCCGTCGCGCACGGCGTCGCCGGA...

Protein

1 records

下载 Protein FASTA

XP_057778396.1
MMGRAVVVLLWWWIWAANADYTIYQDPKQAVGRRVKDLLSRMSLQEKIGQMTQIDRLVASAHVLNKYYIGSVLSGGGSVPSRTASPETWVDMVNAFQKGSLSTRLKIPMIYGIDAVHGHNAVYRATVFPHNVGIGATSDPQLVKRIGAATALEVRATGIPYVFAPCVAVCRDPRWGRCFESYSEDPKVVREMTQIIPGLQGQIPPNSPKGVPFVAGQQKVVACAKHYVGDGGTTRGINENNTVASRHDLLSIHMAPYYSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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