当前解析结果
SmilChr08G003813| 统一新 Gene ID | SmilChr08G003813 |
|---|---|
| 名称 | SmilChr08G003813 |
| 描述 | glycerol-3-phosphate acyltransferase 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 44297254 - 44299352 / + |
| NCBI Gene ID | LOC130996767 |
|---|---|
| GeneID | 130996767 |
| locus_tag | - |
| NCBI Name | LOC130996767 |
| 原始查询 | SmilChr08G003813 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerol-3-phosphate acyltransferase 5-like |
| 产物 | glycerol-3-phosphate acyltransferase 5-like |
| Arabidopsis | AT3G11430 (GPAT5)glycerol-3-phosphate acyltransferase 5 [Source:NCBI gene (formerly Entrezgene);Acc:820316] identity=68.7; qcov=0.992; evalue=0; confidence=high |
| Rice | Os05g0457800 (GPAT)- identity=64.9; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase); PF23270 (HAD_RAM2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996767 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057778047.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057778047.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778047.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778047.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778047.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:44297747 |
GCC |
G |
2bp_deletion | frameshift_variant | 2 | A4,C74 |
Chr8:44297747 |
GCC |
G |
2bp_deletion | CDS_variant | 2 | A4,C74 |
Chr8:44297976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,C9 |
Chr8:44298003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:44298005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B74,C11,C69 |
Chr8:44298008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B52,C16,C39,C67 |
Chr8:44298426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:44298427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:44298580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr8:44298800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B6,B62,C14,C8 |
Chr8:44298997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr8:44299102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B45,C34,C63,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778047.1PF23270
HAD_RAM2_N 4-187 aa
PF01553
Acyltransferase 279-381 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778047.1 |
Pfam | PF23270 |
HAD_RAM2_N | Domain | 4 | 187 | 1.3e-58 | 198.5 | Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain |
XP_057778047.1 |
Pfam | PF01553 |
Acyltransferase | Family | 279 | 381 | 1.2e-06 | 29.0 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。