当前解析结果
SmilChr08G003870| 统一新 Gene ID | SmilChr08G003870 |
|---|---|
| 名称 | SmilChr08G003870 |
| 描述 | serine/threonine-protein kinase BSK5 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 45784426 - 45788763 / + |
| NCBI Gene ID | LOC130996768 |
|---|---|
| GeneID | 130996768 |
| locus_tag | - |
| NCBI Name | LOC130996768 |
| 原始查询 | SmilChr08G003870 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase BSK5 |
| 产物 | serine/threonine-protein kinase BSK5 |
| Arabidopsis | AT5G59010 (BSK5)kinase with tetratricopeptide repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836018] identity=74.9; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0825300 (OsRLCK119)- identity=59.8; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0009742 (brassinosteroid mediated signaling pathway) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF25575 (TPR_BSK1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996768 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778049.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057778049.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778049.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778049.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778049.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:45786304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B16,B98,C2,C80 |
Chr8:45786782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C32 |
Chr8:45786806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C2,C32 |
Chr8:45786830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C29,C32 |
Chr8:45787028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr8:45787080 |
C |
CG |
1bp_insertion | frameshift_variant | 93 | A11,A21,A3,A4,A6,A7,A9,B101,B105,B108,B109,B111,B114,B115,B118,B12,B120,B126,B130,B133,B134,B135,B136,B139,B15,B18,B19,B21,B23,B24,B25,B28,B30,B31,B32,B33,B38,B39,B40,B42,B43,B52,B55,B57,B6,B65,B66,B7,B71,B75,B76,B77,B78,B8,B80,B88,B90,B92,B93,B94,B97,B99,C10,C11,C13,C14,C18,C19,C2,C22,C26,C27,C32,C35,C36,C42,C49,C53,C54,C6,C61,C63,C67,C68,C69,C70,C72,C78,C83,D10,D3,D4,D8 |
Chr8:45787109 |
CAG |
C |
2bp_deletion | frameshift_variant | 1 | C60 |
Chr8:45787109 |
CAG |
C |
2bp_deletion | CDS_variant | 1 | C60 |
Chr8:45787115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B85,C44 |
Chr8:45787125 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B140 |
Chr8:45787125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:45787231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B129,B132,C13,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778049.1PF00069
Pkinase 69-304 aa
PF07714
PK_Tyr_Ser-Thr 69-307 aa
PF25575
TPR_BSK1_C 346-463 aa
XP_057778050.1PF00069
Pkinase 69-304 aa
PF07714
PK_Tyr_Ser-Thr 69-307 aa
PF25575
TPR_BSK1_C 345-462 aa
XP_057778051.1PF00069
Pkinase 69-304 aa
PF07714
PK_Tyr_Ser-Thr 69-307 aa
PF25575
TPR_BSK1_C 344-461 aa
XP_057778052.1PF00069
Pkinase 69-304 aa
PF07714
PK_Tyr_Ser-Thr 69-307 aa
PF25575
TPR_BSK1_C 346-459 aa
XP_057778053.1PF00069
Pkinase 69-304 aa
PF07714
PK_Tyr_Ser-Thr 69-307 aa
PF25575
TPR_BSK1_C 344-457 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778049.1 |
Pfam | PF00069 |
Pkinase | Domain | 69 | 304 | 9.6e-22 | 78.4 | Protein kinase domain |
XP_057778049.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 69 | 307 | 4.7e-25 | 89.1 | Protein tyrosine and serine/threonine kinase |
XP_057778049.1 |
Pfam | PF25575 |
TPR_BSK1_C | Repeat | 346 | 463 | 1.1e-63 | 213.1 | Serine/threonine-protein kinase BSK1-like, TPR repeats |
XP_057778050.1 |
Pfam | PF00069 |
Pkinase | Domain | 69 | 304 | 9.5e-22 | 78.4 | Protein kinase domain |
XP_057778050.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 69 | 307 | 4.7e-25 | 89.1 | Protein tyrosine and serine/threonine kinase |
XP_057778050.1 |
Pfam | PF25575 |
TPR_BSK1_C | Repeat | 345 | 462 | 1.1e-63 | 213.1 | Serine/threonine-protein kinase BSK1-like, TPR repeats |
XP_057778051.1 |
Pfam | PF00069 |
Pkinase | Domain | 69 | 304 | 9.5e-22 | 78.4 | Protein kinase domain |
XP_057778051.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 69 | 307 | 4.6e-25 | 89.1 | Protein tyrosine and serine/threonine kinase |
XP_057778051.1 |
Pfam | PF25575 |
TPR_BSK1_C | Repeat | 344 | 461 | 1.1e-63 | 213.1 | Serine/threonine-protein kinase BSK1-like, TPR repeats |
XP_057778052.1 |
Pfam | PF00069 |
Pkinase | Domain | 69 | 304 | 9.4e-22 | 78.4 | Protein kinase domain |
XP_057778052.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 69 | 307 | 4.5e-25 | 89.1 | Protein tyrosine and serine/threonine kinase |
XP_057778052.1 |
Pfam | PF25575 |
TPR_BSK1_C | Repeat | 346 | 459 | 2.1e-57 | 192.8 | Serine/threonine-protein kinase BSK1-like, TPR repeats |
XP_057778053.1 |
Pfam | PF00069 |
Pkinase | Domain | 69 | 304 | 9.3e-22 | 78.4 | Protein kinase domain |
XP_057778053.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 69 | 307 | 4.5e-25 | 89.2 | Protein tyrosine and serine/threonine kinase |
XP_057778053.1 |
Pfam | PF25575 |
TPR_BSK1_C | Repeat | 344 | 457 | 2.1e-57 | 192.8 | Serine/threonine-protein kinase BSK1-like, TPR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。