当前解析结果
SmilChr08G003888| 统一新 Gene ID | SmilChr08G003888 |
|---|---|
| 名称 | SmilChr08G003888 |
| 描述 | CBL-interacting serine/threonine-protein kinase 7-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 46186448 - 46187062 / + |
| NCBI Gene ID | LOC130998548 |
|---|---|
| GeneID | 130998548 |
| locus_tag | - |
| NCBI Name | LOC130998548 |
| 原始查询 | SmilChr08G003888 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 7-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 7-like |
| Arabidopsis | AT3G23000 (CIPK7)CBL-interacting protein kinase 7 [Source:NCBI gene (formerly Entrezgene);Acc:821874] identity=43.6; qcov=0.618; evalue=1.52e-22; confidence=medium |
| Rice | Os03g0634400 (OsCIPK07)- identity=38.8; qcov=0.833; evalue=1.76e-24; confidence=medium |
| GO | GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF03822 (NAF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998548 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057779946.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057779946.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057779946.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779946.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779946.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:46186454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B107 |
Chr8:46186458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B71,B89,C70 |
Chr8:46186552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:46186553 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B51,B52,B72,C10,C83 |
Chr8:46186572 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B68 |
Chr8:46186572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:46186576 |
TA |
T |
1bp_deletion | frameshift_variant | 30 | A13,A16,A23,A25,B101,B118,B12,B125,B129,B130,B134,B18,B28,B37,B42,B43,B45,B74,B87,B95,C11,C17,C28,C31,C37,C59,C69,C70,D7,D9 |
Chr8:46186585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:46186610 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A23,A25,B18,B28,B37,B42,B43,B87,C31,C37 |
Chr8:46186702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B56,B96,D4 |
Chr8:46186748 |
A |
ATC |
2bp_insertion | frameshift_variant | 6 | A5,B39,B70,C52,C68,C87 |
Chr8:46186769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779946.1PF03822
NAF 79-130 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779946.1 |
Pfam | PF03822 |
NAF | Domain | 79 | 130 | 2.3e-11 | 44.4 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。