当前解析结果
SmilChr08G003946| 统一新 Gene ID | SmilChr08G003946 |
|---|---|
| 名称 | SmilChr08G003946 |
| 描述 | peptidyl-prolyl cis-trans isomerase CYP57-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 47251241 - 47254671 / + |
| NCBI Gene ID | LOC130998563 |
|---|---|
| GeneID | 130998563 |
| locus_tag | - |
| NCBI Name | LOC130998563 |
| 原始查询 | SmilChr08G003946 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peptidyl-prolyl cis-trans isomerase CYP57-like |
| 产物 | peptidyl-prolyl cis-trans isomerase CYP57-like |
| Arabidopsis | AT4G33060 (AT4G33060)Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829443] identity=49.5; qcov=0.909; evalue=2.62e-40; confidence=medium |
| Rice | Os01g0582400 (OsCYP57)- identity=46.9; qcov=0.913; evalue=6.05e-35; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998563 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779962.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057779962.1 |
| 3 | Nuclear body | 核内小体 | 0.60000 | XP_057779962.1 |
| 4 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.40000 | XP_057779962.1 |
| 5 | Nucleolus | 核仁 | 0.20000 | XP_057779962.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:47251395 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | C14 |
Chr8:47251395 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C14 |
Chr8:47251409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:47251429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr8:47251432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,C11,C69 |
Chr8:47251476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:47251524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:47251527 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr8:47251547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B40,C13,C61 |
Chr8:47251984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,D5 |
Chr8:47252028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:47252067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B111,B71,C62,C83 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。