当前解析结果
SmilChr08G003948| 统一新 Gene ID | SmilChr08G003948 |
|---|---|
| 名称 | SmilChr08G003948 |
| 描述 | uncharacterized SmilChr08G003948 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 47271830 - 47274196 / - |
| NCBI Gene ID | LOC130998564 |
|---|---|
| GeneID | 130998564 |
| locus_tag | - |
| NCBI Name | LOC130998564 |
| 原始查询 | SmilChr08G003948 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=low |
| 产物 | hit=Os12g0142900; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=36.6; qcov=0.174; evalue=3.88e-16; confidence=weak |
| Rice | Os12g0142900- identity=32.9; qcov=0.418; evalue=3.43e-58; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998564 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057779963.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057779963.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779963.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779963.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779963.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:47271866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:47271893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B42,B71 |
Chr8:47271901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:47271912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B79,C43 |
Chr8:47271914 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,C34,C55 |
Chr8:47271932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B103 |
Chr8:47271942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:47271956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:47271973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:47271978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B10,B120,C47,C68 |
Chr8:47271979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B35,B72 |
Chr8:47271985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B110,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779963.1PF00078
RVT_1 9-169 aa
PF17919
RT_RNaseH_2 234-329 aa
PF17917
RT_RNaseH 262-352 aa
PF00075
RNase_H 394-515 aa
PF13456
RVT_3 396-515 aa
PF17921
Integrase_H2C2 615-668 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779963.1 |
Pfam | PF00078 |
RVT_1 | Domain | 9 | 169 | 7.5e-34 | 118.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057779963.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 234 | 329 | 1.1e-20 | 74.2 | RNase H-like domain found in reverse transcriptase |
XP_057779963.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 262 | 352 | 2.3e-18 | 67.0 | RNase H-like domain found in reverse transcriptase |
XP_057779963.1 |
Pfam | PF00075 |
RNase_H | Domain | 394 | 515 | 1.2e-07 | 32.7 | RNase H |
XP_057779963.1 |
Pfam | PF13456 |
RVT_3 | Domain | 396 | 515 | 1.9e-19 | 70.5 | Reverse transcriptase-like |
XP_057779963.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 615 | 668 | 1.1e-09 | 39.0 | Integrase zinc binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。