当前解析结果
SmilChr08G003953| 统一新 Gene ID | SmilChr08G003953 |
|---|---|
| 名称 | SmilChr08G003953 |
| 描述 | uncharacterized SmilChr08G003953 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 47310323 - 47315294 / + |
| NCBI Gene ID | LOC130998566 |
|---|---|
| GeneID | 130998566 |
| locus_tag | - |
| NCBI Name | LOC130998566 |
| 原始查询 | SmilChr08G003953 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0539700; species=rice; confidence=low |
| 产物 | hit=Os12g0539700; species=rice; confidence=low |
| Arabidopsis | AT3G51700 (AT3G51700)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824333] identity=36.27; qcov=0.178; evalue=2.3e-47; confidence=weak |
| Rice | Os12g0539700- identity=38.02; qcov=0.318; evalue=2.52e-100; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998566 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:47310337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B22 |
Chr8:47310461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B22,B65,C6 |
Chr8:47310467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B16,C39 |
Chr8:47310482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,C12,D6 |
Chr8:47310491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B22,C43,C74 |
Chr8:47310506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C6 |
Chr8:47310508 |
AG |
A |
1bp_deletion | frameshift_variant | 195 | A1,A10,A11,A14,A15,A16,A18,A19,A2,A20,A21,A22,A24,A25,A3,A5,A6,A7,A9,B1,B10,B103,B106,B107,B108,B110,B111,B113,B117,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B129,B13,B130,B131,B133,B135,B136,B137,B138,B139,B140,B17,B18,B19,B2,B21,B22,B23,B24,B25,B27,B29,B32,B33,B34,B37,B38,B4,B40,B42,B43,B44,B45,B47,B49,B5,B51,B52,B53,B55,B58,B59,B6,B60,B61,B62,B63,B64,B66,B67,B68,B69,B7,B71,B72,B75,B77,B78,B8,B82,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,B98,B99,C1,C10,C13,C15,C16,C17,C18,C2,C20,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C72,C73,C74,C75,C76,C77,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D5,D6,D7,D9 |
Chr8:47310562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr8:47310565 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | C72 |
Chr8:47310565 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | C72 |
Chr8:47310568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr8:47310771 |
G |
A |
EMS_canonical_SNV | stop_gained | 14 | B110,B13,B24,B27,B52,B70,B74,B85,B94,C12,C45,C46,C52,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779966.1PF14214
Helitron_like_N 341-523 aa
PF05970
PIF1 922-1141 aa
PF21530
Pif1_2B_dom 1199-1245 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779966.1 |
Pfam | PF14214 |
Helitron_like_N | Domain | 341 | 523 | 3.4e-61 | 207.5 | Helitron helicase-like domain at N-terminus |
XP_057779966.1 |
Pfam | PF05970 |
PIF1 | Family | 922 | 1141 | 2.6e-94 | 315.7 | PIF1-like helicase |
XP_057779966.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 1199 | 1245 | 3.6e-22 | 78.5 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。