Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003969

染色体: Chr08 坐标: 47675875-47682584 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003969
名称SmilChr08G003969
描述uncharacterized SmilChr08G003969
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向47675875 - 47682584 / -

ID 对照

NCBI Gene IDLOC130996860
GeneID130996860
locus_tag-
NCBI NameLOC130996860
原始查询SmilChr08G003969

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804]; symbol=AT4G36520; hit=AT4G36520; species=arabidopsis; confidence=weak
产物Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804]; symbol=AT4G36520; hit=AT4G36520; species=arabidopsis; confidence=weak
ArabidopsisAT4G36520 (AT4G36520)
Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804]
identity=60.8; qcov=0.257; evalue=2.45e-89; confidence=weak
RiceOs05g0579900 (OsDjC52)
-
identity=60.5; qcov=0.241; evalue=1.47e-85; confidence=weak
GOGO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130996860

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057778108.1
2 Cytoplasm 细胞质 0.20000 XP_057778108.1
3 Cytoskeleton 细胞骨架 0.20000 XP_057778108.1
4 Nucleus 细胞核 0.00000 XP_057778108.1
5 Chromosome 染色体 0.00000 XP_057778108.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:47676953 C T EMS_canonical_SNV CDS_variant 2 A15,B77
Chr8:47677037 C T EMS_canonical_SNV CDS_variant 1 C52
Chr8:47678087 C T EMS_canonical_SNV CDS_variant 1 C71
Chr8:47678362 C T EMS_canonical_SNV CDS_variant 1 B77
Chr8:47678826 C T EMS_canonical_SNV CDS_variant 2 B25,C28
Chr8:47678849 G A EMS_canonical_SNV CDS_variant 1 B77
Chr8:47679123 G A EMS_canonical_SNV CDS_variant 2 B18,C37
Chr8:47679427 G A EMS_canonical_SNV CDS_variant 1 B68
Chr8:47679593 G A EMS_canonical_SNV CDS_variant 1 B58
Chr8:47679763 C T EMS_canonical_SNV CDS_variant 5 A18,B104,C59,C64,C66
Chr8:47679863 G A EMS_canonical_SNV CDS_variant 2 C8,D7
Chr8:47680170 C T EMS_canonical_SNV CDS_variant 1 B77

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057922126.1
CCTAAAATTGTCATTTCTAAATCCCTTAAGCTTGAGTCTTGAGTCCTCATCATTCCTCCCACCACAGCACTCACGCCATGCTCCTTCCTCCCACACAAAAAGTAACGGAAATGGGCAGCATTTCTCTCTCACCTCCATAACGCCGCCTCCACTTCTCAATGCGCTCCTCCGCCTAGAGACAAAGCAACGGAAATGGAGAACATTTCTCTGTCACTCCCAAAGAGGAGCTTCTCTTCCAACACTGTCTTCACATCTCACAA...
XM_057922125.1
CTAAATCCCTTAAGCTTGAGTCTTGAGTCCTCATCATTCCTCCCACCACAGCACTCACGCCATGCTCCTTCCTCCCACACAAAAAGTAACGGAAATGGGCAGCATTTCTCTCTCACCTCCATAACGCCGCCTCCACTTCTCAATGCGCTCCTCCGCCTAGACGACATACACTTTCCTTTCAGAGACAAAGCAACGGAAATGGAGAACATTTCTCTGTCACTCCCAAAGAGGAGCTTCTCTTCCAACACTGTCTTCACATC...

CDS

2 records

下载 CDS FASTA
LOC130996860
ATGGAGAACATTTCTCTGTCACTCCCAAAGAGGAGCTTCTCTTCCAACACTGTCTTCACATCTCACAAGTCCATTTACAATGATGTTTTTGGTGGCCCTCCAAAGTTGGGGCTGCCCAATCTGGCCCCGCGCTTTGAGGATTACTCAGAGATTTTTGGCGGCTTTCACACCTCCCAATCTTCATCCATCCCCGTGCTCCATCTCCCACTCCTTGCCAGTGAGGACTCCAGCCTCCACTCTGATGTTGACTACAATGAGGT...
LOC130996860
ATGGAGAACATTTCTCTGTCACTCCCAAAGAGGAGCTTCTCTTCCAACACTGTCTTCACATCTCACAAGTCCATTTACAATGATGTTTTTGGTGGCCCTCCAAAGTTGGGGCTGCCCAATCTGGCCCCGCGCTTTGAGGATTACTCAGAGATTTTTGGCGGCTTTCACACCTCCCAATCTTCATCCATCCCCGTGCTCCATCTCCCACTCCTTGCCAGTGAGGACTCCAGCCTCCACTCTGATGTTGACTACAATGAGGT...

Protein

2 records

下载 Protein FASTA
XP_057778108.1
MENISLSLPKRSFSSNTVFTSHKSIYNDVFGGPPKLGLPNLAPRFEDYSEIFGGFHTSQSSSIPVLHLPLLASEDSSLHSDVDYNEVFGGCEGFDCTASLEDLVGHSSGRYDSDSSDDPWSPVQSGSLSDELDPLAGSDKSQRLSDGDFRQSSESVNKQIASYNKSCHISAETVLTTASHVTNFSAVPGYTFSLYESPLSWDGDDEDCSEGVINNTNHSREYGARVTGEKQCKCSSNSSISGSDTQRNDSKLSEIHGSST...
XP_057778109.1
MENISLSLPKRSFSSNTVFTSHKSIYNDVFGGPPKLGLPNLAPRFEDYSEIFGGFHTSQSSSIPVLHLPLLASEDSSLHSDVDYNEVFGGCEGFDCTASLEDLVGHSSGRYDSDSSDDPWSPVQSGSLSDELDPLAGSDKSQRLSDGDFRQSSESVNKQIASYNKSCHISAETVLTTASHVTNFSAVPGYTFSLYESPLSWDGDDEDCSEGVINNTNHSREYGARVTGEKQCKCSSNSSISGSDTQRNDSKLSEIHGSST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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