当前解析结果
SmilChr08G003969| 统一新 Gene ID | SmilChr08G003969 |
|---|---|
| 名称 | SmilChr08G003969 |
| 描述 | uncharacterized SmilChr08G003969 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 47675875 - 47682584 / - |
| NCBI Gene ID | LOC130996860 |
|---|---|
| GeneID | 130996860 |
| locus_tag | - |
| NCBI Name | LOC130996860 |
| 原始查询 | SmilChr08G003969 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804]; symbol=AT4G36520; hit=AT4G36520; species=arabidopsis; confidence=weak |
| 产物 | Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804]; symbol=AT4G36520; hit=AT4G36520; species=arabidopsis; confidence=weak |
| Arabidopsis | AT4G36520 (AT4G36520)Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804] identity=60.8; qcov=0.257; evalue=2.45e-89; confidence=weak |
| Rice | Os05g0579900 (OsDjC52)- identity=60.5; qcov=0.241; evalue=1.47e-85; confidence=weak |
| GO | GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996860 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057778108.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057778108.1 |
| 3 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057778108.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057778108.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778108.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:47676953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B77 |
Chr8:47677037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr8:47678087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr8:47678362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr8:47678826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,C28 |
Chr8:47678849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr8:47679123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B18,C37 |
Chr8:47679427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:47679593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr8:47679763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B104,C59,C64,C66 |
Chr8:47679863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C8,D7 |
Chr8:47680170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。