当前解析结果
SmilChr08G003998| 统一新 Gene ID | SmilChr08G003998 |
|---|---|
| 名称 | SmilChr08G003998 |
| 描述 | UDP-glycosyltransferase 92A1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 48261860 - 48264030 / - |
| NCBI Gene ID | LOC130996863 |
|---|---|
| GeneID | 130996863 |
| locus_tag | - |
| NCBI Name | LOC130996863 |
| 原始查询 | SmilChr08G003998 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 92A1-like |
| 产物 | UDP-glycosyltransferase 92A1-like |
| Arabidopsis | AT5G12890 (AT5G12890)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831129] identity=38.9; qcov=0.998; evalue=1.46e-117; confidence=medium |
| Rice | Os04g0506000- identity=39.2; qcov=1.03; evalue=2.53e-103; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996863 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057778114.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057778114.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778114.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778114.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778114.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:48262571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:48262658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B13 |
Chr8:48262729 |
AC |
A |
1bp_deletion | frameshift_variant | 56 | A16,A21,A23,B101,B106,B113,B119,B126,B132,B134,B140,B15,B2,B22,B23,B27,B31,B35,B37,B38,B39,B41,B42,B43,B5,B51,B52,B57,B60,B63,B65,B67,B7,B72,B74,B76,B83,C10,C11,C13,C19,C32,C45,C47,C57,C6,C61,C69,C7,C76,C77,C79,C82,C85,C86,D8 |
Chr8:48262790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C74 |
Chr8:48262798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B78,C27 |
Chr8:48262840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:48262856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B12,B78,C27 |
Chr8:48262858 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A10,B10,B107,B22,B68,B84,C12,C3 |
Chr8:48262889 |
G |
A |
EMS_canonical_SNV | stop_gained | 75 | A16,A18,A19,A2,A24,A4,B1,B103,B105,B108,B110,B111,B117,B126,B134,B137,B139,B140,B18,B2,B24,B26,B28,B33,B35,B4,B45,B46,B48,B50,B55,B56,B66,B7,B74,B75,B79,B8,B80,B84,B85,B86,B9,B96,C1,C13,C18,C2,C22,C23,C28,C29,C30,C35,C37,C4,C40,C43,C50,C59,C60,C62,C70,C72,C77,C79,C83,C85,C87,C9,D10,D11,D4,D7,D9 |
Chr8:48262919 |
G |
A |
EMS_canonical_SNV | stop_gained | 50 | A10,A18,A22,A25,A4,B101,B109,B112,B122,B136,B139,B14,B21,B24,B27,B33,B34,B49,B56,B58,B62,B64,B65,B73,B74,B82,B85,B93,B95,C11,C14,C20,C21,C24,C26,C32,C36,C38,C48,C49,C52,C54,C64,C66,C68,C69,C71,C74,C84,D3 |
Chr8:48262940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:48262946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778114.1PF26168
Glyco_transf_N 8-152 aa
PF00201
UDPGT 278-439 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778114.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 8 | 152 | 1.7e-12 | 48.5 | Glycosyltransferase, N-terminal domain |
XP_057778114.1 |
Pfam | PF00201 |
UDPGT | Family | 278 | 439 | 2.2e-18 | 67.1 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。