Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004002`

染色体: Chr08 坐标: 48332599-48338158 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004002`
名称	SmilChr08G004002
描述	pentatricopeptide repeat-containing protein At5g14770, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	48332599 - 48338158 / `-`

ID 对照

NCBI Gene ID	`LOC130996861`
GeneID	`130996861`
locus_tag	`-`
NCBI Name	`LOC130996861`
原始查询	`SmilChr08G004002`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g14770, mitochondrial
产物	pentatricopeptide repeat-containing protein At5g14770%2C mitochondrial
Arabidopsis	`AT5G14770` (AT5G14770) PPR repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:831329] identity=42.6; qcov=0.853; evalue=0; confidence=medium
Rice	`Os02g0824000` - identity=39.9; qcov=0.885; evalue=0; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130996861

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057778110.1`
2	Chloroplast	叶绿体	0.20000	`XP_057778110.1`
3	Nucleus	细胞核	0.00000	`XP_057778110.1`
4	Chromosome	染色体	0.00000	`XP_057778110.1`
5	Centromere	着丝粒	0.00000	`XP_057778110.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:48334615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:48334761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B119,C12
`Chr8:48334770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B31,B61,C65,C81,D10
`Chr8:48334776`	`T`	`TA`	1bp_insertion	frameshift_variant	202	A10,A11,A13,A14,A15,A16,A19,A20,A21,A23,A24,A25,A4,A6,A7,A8,A9,B10,B100,B101,B103,B105,B106,B108,B109,B11,B110,B111,B112,B113,B114,B115,B118,B119,B12,B121,B122,B123,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B14,B16,B17,B18,B19,B2,B20,B21,B22,B23,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B62,B63,B64,B65,B66,B67,B68,B69,B70,B72,B74,B75,B76,B77,B78,B79,B80,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C16,C19,C2,C20,C21,C22,C23,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C46,C49,C50,C51,C54,C56,C57,C58,C59,C6,C60,C61,C64,C65,C66,C69,C7,C71,C72,C73,C74,C75,C76,C77,C78,C80,C81,C83,C86,C87,C9,D10,D3,D4,D5,D6,D7,D8
`Chr8:48334900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr8:48334910`	`AC`	`A`	1bp_deletion	frameshift_variant	10	A16,A9,B136,B25,B30,B7,C27,C28,C51,C61
`Chr8:48334911`	`CA`	`C`	1bp_deletion	frameshift_variant	249	A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C79,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9
`Chr8:48334921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,C5,C79
`Chr8:48334971`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B37
`Chr8:48334971`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B37
`Chr8:48334978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C8
`Chr8:48335012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B23,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778110.1

1023 aa

512

1023

PPR

PPR_1

PPR

PPR_2

PPR

PPR_1

PPR_2

PPR_3

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

PPR_3

PPR

PPR_3

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_3

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR_2

PPR

PF01535 PPR 125-145 aa PF12854 PPR_1 155-183 aa PF01535 PPR 157-187 aa PF13041 PPR_2 157-203 aa PF01535 PPR 192-217 aa PF12854 PPR_1 230-258 aa PF13041 PPR_2 230-278 aa PF13812 PPR_3 231-276 aa PF01535 PPR 235-263 aa PF12854 PPR_1 262-292 aa PF13041 PPR_2 265-298 aa PF01535 PPR 268-298 aa PF13812 PPR_3 316-361 aa PF13041 PPR_2 317-362 aa PF01535 PPR 320-350 aa PF01535 PPR 355-385 aa PF13041 PPR_2 360-397 aa PF12854 PPR_1 384-416 aa PF01535 PPR 390-420 aa PF13812 PPR_3 411-467 aa PF12854 PPR_1 418-447 aa PF13041 PPR_2 423-471 aa PF01535 PPR 425-454 aa PF17177 PPR_long 441-546 aa PF13812 PPR_3 447-506 aa PF12854 PPR_1 454-476 aa PF01535 PPR 460-490 aa PF13041 PPR_2 460-506 aa PF12854 PPR_1 489-521 aa PF13041 PPR_2 492-540 aa PF01535 PPR 495-525 aa PF13812 PPR_3 516-572 aa PF01535 PPR 530-559 aa PF01535 PPR 570-594 aa PF01535 PPR 601-626 aa PF13812 PPR_3 621-678 aa PF23276 TPR_24 660-732 aa PF12854 PPR_1 663-695 aa PF13041 PPR_2 666-715 aa PF01535 PPR 670-698 aa PF13812 PPR_3 689-739 aa PF12854 PPR_1 698-728 aa PF01535 PPR 704-729 aa PF13812 PPR_3 762-816 aa PF01535 PPR 775-804 aa PF13812 PPR_3 794-851 aa PF12854 PPR_1 803-834 aa PF13041 PPR_2 807-854 aa PF01535 PPR 809-839 aa PF13812 PPR_3 832-884 aa PF13041 PPR_2 842-888 aa PF01535 PPR 845-874 aa PF01535 PPR 880-909 aa PF13812 PPR_3 900-955 aa PF13041 PPR_2 911-959 aa PF01535 PPR 914-942 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	125	145	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	155	183	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	157	187	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	157	203	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	192	217	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	230	258	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	230	278	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	231	276	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	235	263	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	262	292	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	265	298	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	268	298	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	316	361	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	317	362	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	320	350	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	355	385	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	360	397	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	384	416	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	390	420	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	411	467	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	418	447	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	423	471	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	425	454	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF17177`	PPR_long	Repeat	441	546	1.6e-53	182.0	Pentacotripeptide-repeat region of PRORP
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	447	506	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	454	476	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	460	490	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	460	506	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	489	521	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	492	540	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	495	525	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	516	572	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	530	559	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	570	594	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	601	626	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	621	678	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF23276`	TPR_24	Repeat	660	732	1.5e-44	151.9	Pentatricopeptide repeat-containing protein
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	663	695	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	666	715	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	670	698	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	689	739	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	698	728	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	704	729	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	762	816	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	775	804	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	794	851	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF12854`	PPR_1	Repeat	803	834	9.8e-165	534.6	PPR repeat
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	807	854	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	809	839	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	832	884	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	842	888	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	845	874	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	880	909	1.1e-139	446.1	PPR repeat
`XP_057778110.1`	Pfam	`PF13812`	PPR_3	Repeat	900	955	3.8e-90	296.7	Pentatricopeptide repeat domain
`XP_057778110.1`	Pfam	`PF13041`	PPR_2	Repeat	911	959	7.3e-193	625.4	PPR repeat family
`XP_057778110.1`	Pfam	`PF01535`	PPR	Repeat	914	942	1.1e-139	446.1	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922127.1
TGAAGACTACATTAATTGGGACCTGACTCATAGAGCAAGATCCCTCCAAAAATTGGTGTATGCCTCTTTATTGCAACGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTGTGCTCAATGCGAGGCTGCATATTTCTTCTCTAAGCCGTGGCCTTCGTTTTTATAGATGCAAGTGTTGGTTTCATTGTGGCTTTTACGATGTGGGAAACTTACCTGCCATTTACAAGCATAAGCATTTGCTAACTAA...

CDS

1 records

下载 CDS FASTA

LOC130996861
ATGCCCGCGTTGAAGCCCAAAATGCTGATAAACCCACAGCGGCATTTCATCAAACACTTGGCAGATGCATCAATGCCCCTCCTCTCCCGCTCACTCGCATCCGCTTCTTCAGCCCAGGACTTGGGAATACGAAACCCCCATCAATTCTACACCTCGCTCTTCTGCACTCTCATCCATCTCTTCCTCCGCTGCCGCCGCCTCTCCAAGGCCATAGCCGCTTTCTCCGCCATGAGGGATTACAAATTCACGCCGGAGCTCCC...

Protein

1 records

下载 Protein FASTA

XP_057778110.1
MPALKPKMLINPQRHFIKHLADASMPLLSRSLASASSAQDLGIRNPHQFYTSLFCTLIHLFLRCRRLSKAIAAFSAMRDYKFTPELPDWNGLLHHFNCTGLVHQVMLMYQEMIFCGVRPDVATKNVVVHSLCKVGDFDKALSFLRDNDDYRFMSDGVTYNTLIWGFCKCGYVEMALGLVSEMVKRGVNCDSFTCNILVKGFCDKGLLENAKLVMDTMSSGLVTDGTVVPRDVVGFNTLINGYCKAGEVSVGLQLIGRMTK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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