Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004007`

染色体: Chr08 坐标: 48426339-48429564 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004007`
名称	SmilChr08G004007
描述	serine racemase
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	48426339 - 48429564 / `+`

ID 对照

NCBI Gene ID	`LOC130996871`
GeneID	`130996871`
locus_tag	`-`
NCBI Name	`LOC130996871`
原始查询	`SmilChr08G004007`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine racemase
产物	serine racemase
Arabidopsis	`AT4G11640` (SR) serine racemase [Source:NCBI gene (formerly Entrezgene);Acc:826769] identity=76.2; qcov=0.988; evalue=0; confidence=high
Rice	`Os04g0555900` (SERR) - identity=70.3; qcov=0.988; evalue=8.43e-172; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0003941 (L-serine ammonia-lyase activity); GO:0005524 (ATP binding); GO:0006563 (L-serine metabolic process); GO:0008721 (D-serine ammonia-lyase activity); GO:0018114 (threonine racemase activity); GO:0030170 (pyridoxal phosphate binding); GO:0030378 (serine racemase activity); GO:0042866 (pyruvate biosynthetic process); GO:0070179 (D-serine biosynthetic process)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00470 (D-Amino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00291 (PALP)
InterPro	-
eggNOG	-
NR	GeneID:130996871

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057778129.1`
2	Nucleus	细胞核	0.20000	`XP_057778129.1`
3	Chromosome	染色体	0.00000	`XP_057778129.1`
4	Centromere	着丝粒	0.00000	`XP_057778129.1`
5	Chromatin	染色质	0.00000	`XP_057778129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:48428378`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:48428792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B13,B26,C30,C73
`Chr8:48429021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr8:48429056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr8:48429093`	`T`	`TC`	1bp_insertion	frameshift_variant	3	C32,C73,C76
`Chr8:48429093`	`T`	`TC`	1bp_insertion	CDS_variant	3	C32,C73,C76
`Chr8:48429097`	`TG`	`T`	1bp_deletion	frameshift_variant	3	C32,C73,C76
`Chr8:48429097`	`TG`	`T`	1bp_deletion	CDS_variant	3	C32,C73,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778129.1

331 aa

166

331

PALP

PF00291 PALP 22-315 aa

XP_057778130.1

331 aa

166

331

PALP

PF00291 PALP 22-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778129.1`	Pfam	`PF00291`	PALP	Family	22	315	2.9e-78	263.9	Pyridoxal-phosphate dependent enzyme
`XP_057778130.1`	Pfam	`PF00291`	PALP	Family	22	315	2.9e-78	263.9	Pyridoxal-phosphate dependent enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922146.1
GCCCAACTCAATAAATAAATAGATAATAGTAGTAAATTTTGATTTCTACATTGTCTTTTCACTGGAAGGAATCATGTTATGCTGCATCGGAAATACGAACTTGAATAGTTGAATCTCTACTCCAACACAAAGTGAAGTTGACTTGTATGTGAAATTCAAGGGTGAGAAATGGAAGGAAAAGCCCAAGCATATGTTGCTGATATTTCATCAATAAAAGCAGCACAAGATCGCATCAGCTCTCACGCGCACAAAACTCCAGT...

XM_057922147.1
GGAGTAATTCAGAAAGTTGGTTTTTATTCGGGTTAATTGCAATTTTTGGAATTTCTTGCTTATTCTTCGATGATTTTTCCCTTATGAGATGCTTTGTTTTGACAAAATTAGAAAAATATATTTGCTGAGAGCCTGAGAATTGGGAGTTTCTTATCGGATTTAACTGTTCTACATCACATTATGGTCATTTCATTTCATAAAAACTAATTCACTGGCTCTTTACTCCTAGATTTCTCGGTTAATATTGTAAAGGATAGAAA...

CDS

2 records

下载 CDS FASTA

LOC130996871
ATGGAAGGAAAAGCCCAAGCATATGTTGCTGATATTTCATCAATAAAAGCAGCACAAGATCGCATCAGCTCTCACGCGCACAAAACTCCAGTTTTATCCTCAGAGACTCTCGATTCTCTCTCTGGAAGAAAGCTTCACTTCAAATGTGAATGTTTCCAGAAAGGTGGAGCTTTCAAATTCAGAGGGGCCTGCAATGCTGTATTTTCGCTTACAAACGATGAGGCAGCTCGAGGGGTTGTGACACATAGCAGTGGGAATCA...

Protein

2 records

下载 Protein FASTA

XP_057778129.1
MEGKAQAYVADISSIKAAQDRISSHAHKTPVLSSETLDSLSGRKLHFKCECFQKGGAFKFRGACNAVFSLTNDEAARGVVTHSSGNHAAALSLAAKLRGIPAHIVIPKNAPKCKVENVIRYGGQVIWSEATIQSREEVAAKVLKDTGAILIHPYNDGRIISGQGTISLELLEQIPQIDTIIVPISGGGLISGVALAAKSINPSIRILAAEPKGADDAAQSKKAGTIITLPETKTIADGLRASLGSFTWPIVRDLVDDIIV...

XP_057778130.1
MEGKAQAYVADISSIKAAQDRISSHAHKTPVLSSETLDSLSGRKLHFKCECFQKGGAFKFRGACNAVFSLTNDEAARGVVTHSSGNHAAALSLAAKLRGIPAHIVIPKNAPKCKVENVIRYGGQVIWSEATIQSREEVAAKVLKDTGAILIHPYNDGRIISGQGTISLELLEQIPQIDTIIVPISGGGLISGVALAAKSINPSIRILAAEPKGADDAAQSKKAGTIITLPETKTIADGLRASLGSFTWPIVRDLVDDIIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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