Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004033`

染色体: Chr08 坐标: 48780943-48786109 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004033`
名称	SmilChr08G004033
描述	probable linoleate 9S-lipoxygenase 5
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	48780943 - 48786109 / `-`

ID 对照

NCBI Gene ID	`LOC130996920`
GeneID	`130996920`
locus_tag	`-`
NCBI Name	`LOC130996920`
原始查询	`SmilChr08G004033`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable linoleate 9S-lipoxygenase 5
产物	probable linoleate 9S-lipoxygenase 5
Arabidopsis	`AT1G55020` (LOX1) lipoxygenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:841944] identity=63.6; qcov=0.995; evalue=0; confidence=high
Rice	`Os03g0700700` (OsLOX1) - identity=57.6; qcov=1; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen); GO:0034440 (lipid oxidation); GO:0046872 (metal ion binding)
KEGG	smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00305 (Lipoxygenase); PF01477 (PLAT)
InterPro	-
eggNOG	-
NR	GeneID:130996920

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057778176.1`
2	Cytoplasm	细胞质	0.20000	`XP_057778176.1`
3	Nucleus	细胞核	0.00000	`XP_057778176.1`
4	Chromosome	染色体	0.00000	`XP_057778176.1`
5	Centromere	着丝粒	0.00000	`XP_057778176.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:48781356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr8:48781394`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B20
`Chr8:48781394`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B20
`Chr8:48781630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,C29
`Chr8:48781631`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C4
`Chr8:48781631`	`TC`	`T`	1bp_deletion	CDS_variant	1	C4
`Chr8:48782462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:48782493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:48782497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B86,B9
`Chr8:48782508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr8:48782611`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C86
`Chr8:48782611`	`GC`	`G`	1bp_deletion	CDS_variant	1	C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778176.1

856 aa

428

856

PLAT

Lipoxygenase

PF01477 PLAT 64-154 aa PF00305 Lipoxygenase 168-839 aa

XP_057778178.1

855 aa

428

855

PLAT

Lipoxygenase

PF01477 PLAT 63-153 aa PF00305 Lipoxygenase 167-838 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778176.1`	Pfam	`PF01477`	PLAT	Domain	64	154	7.3e-19	69.3	PLAT/LH2 domain
`XP_057778176.1`	Pfam	`PF00305`	Lipoxygenase	Domain	168	839	0	1039.3	Lipoxygenase
`XP_057778178.1`	Pfam	`PF01477`	PLAT	Domain	63	153	5.5e-19	69.7	PLAT/LH2 domain
`XP_057778178.1`	Pfam	`PF00305`	Lipoxygenase	Domain	167	838	0	1039.0	Lipoxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922195.1
TTGTCTGCTTATGCCGATTCGTTTTCCAATCACAGTGATACTGATAATATATTCCCTTCCCAGACACAAACAGTGTTTTCCAACTCCACTTACATGGAATTTGCTACGCTCAAAATCACACTCCCCATCAAATTTAAATATTACCTTTCACACTTTGGAATTTTCCTTGAAATAATACAAGTCAACCTATACTAAAACTAGCACACTGTTTTCTACTAATATAAGTATCTTCTCCCCTTCATCACTCTTACTCCACAATT...

XM_057922193.1
GATTCGTTTTCCAATCACAGTGATACTGATAATATATTCCCTTCCCAGACACAAACAGTGTTTTCCAACTCCACTTACATGGAATTTGCTACGCTCAAAATCACACTCCCCATCAAATTTAAATATTACCTTTCACACTTTGGAATTTTCCTTGAAATAATACAAGTCAACCTATACTAAAACTAGCACACTGTTTTCTACTAATATAAGTATCTTCTCCCCTTCATCACTCTTACTCCACAATTTGCAGCGATGGATGA...

CDS

2 records

下载 CDS FASTA

LOC130996920
ATGGATGAGCGCATCGTCAATGGCGACGTCGGCGGCCAGGTGAGGGGAGTGGTGGTGCTGATGAAGAAGAACGTGCTCGGAGTGAACAACGTCGCGGCGTCGGTCGTCGATCGAGTCGGCGAGTTTTTGGGGAGGAAGGTCGCGCTGCAGCTCATCGGCACCGCCGCTCATCCAGATTCTGCTGAAAGTTGCAGAGGCAAACTTGGGAAGAAAGCATATCTAGAAGACTGGATCACAAAAATCACTCCTATGACAGCAGC...

LOC130996920
ATGGATGAGCGCATCGTCAATGGCGACGTCGGCGGCCAGGTGAGGGGAGTGGTGGTGCTGATGAAGAAGAACGTGCTCGGAGTGAACAACGTCGCGGCGTCGGTCGTCGATCGAGTCGGCGAGTTTTTGGGGAGGAAGGTCGCGCTGCAGCTCATCGGCACCGCCGCTCATCCAGATTCTGCTGCAGAAAGTTGCAGAGGCAAACTTGGGAAGAAAGCATATCTAGAAGACTGGATCACAAAAATCACTCCTATGACAGC...

Protein

2 records

下载 Protein FASTA

XP_057778176.1
MDERIVNGDVGGQVRGVVVLMKKNVLGVNNVAASVVDRVGEFLGRKVALQLIGTAAHPDSAAESCRGKLGKKAYLEDWITKITPMTAAATYNVTFEWSKEMGYPGAFTITNFHHSEFYLKTLTLEDIPGHGRVHFICNSWVYHAECYKKDRIFFANQTYLPSQTPPPLRGYREEELENLRGTGTGKLEEWDRVYDYDIYNDLGDPDKGPEHERPILGGSTEYPYPRRGRTGRPLASSDPRTESRIPAYNSLSIYVPRDER...

XP_057778178.1
MDERIVNGDVGGQVRGVVVLMKKNVLGVNNVAASVVDRVGEFLGRKVALQLIGTAAHPDSAESCRGKLGKKAYLEDWITKITPMTAAATYNVTFEWSKEMGYPGAFTITNFHHSEFYLKTLTLEDIPGHGRVHFICNSWVYHAECYKKDRIFFANQTYLPSQTPPPLRGYREEELENLRGTGTGKLEEWDRVYDYDIYNDLGDPDKGPEHERPILGGSTEYPYPRRGRTGRPLASSDPRTESRIPAYNSLSIYVPRDERF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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