当前解析结果
SmilChr08G004045| 统一新 Gene ID | SmilChr08G004045 |
|---|---|
| 名称 | SmilChr08G004045 |
| 描述 | mannosylglycoprotein endo-beta-mannosidase |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 48957743 - 48964655 / + |
| NCBI Gene ID | LOC130996919 |
|---|---|
| GeneID | 130996919 |
| locus_tag | - |
| NCBI Name | LOC130996919 |
| 原始查询 | SmilChr08G004045 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mannosylglycoprotein endo-beta-mannosidase |
| 产物 | mannosylglycoprotein endo-beta-mannosidase |
| Arabidopsis | AT1G09010 (AT1G09010)glycoside hydrolase family 2 protein [Source:NCBI gene (formerly Entrezgene);Acc:837422] identity=69.1; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0391500- identity=70.2; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00703 (Glyco_hydro_2); PF02836 (Glyco_hydro_2_C); PF18368 (Ig_GlcNase); PF22666 (Glyco_hydro_2_N2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996919 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057778174.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057778174.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778175.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778175.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778175.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:48958638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B107 |
Chr8:48958876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B104,D2 |
Chr8:48958889 |
AAT |
A |
2bp_deletion | frameshift_variant | 139 | A13,A18,A2,A20,A22,A23,A25,A3,A6,A9,B10,B101,B106,B108,B11,B111,B112,B114,B115,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B129,B130,B132,B133,B134,B137,B138,B139,B140,B15,B16,B18,B19,B2,B20,B21,B23,B24,B25,B27,B3,B33,B35,B36,B37,B38,B4,B40,B42,B44,B47,B49,B5,B50,B53,B56,B59,B60,B62,B63,B64,B76,B77,B81,B83,B85,B87,B88,B89,B9,B90,B93,B94,B95,B96,B97,B98,C10,C13,C14,C15,C19,C20,C21,C24,C27,C28,C29,C32,C33,C35,C36,C40,C41,C42,C44,C45,C47,C48,C5,C51,C52,C53,C54,C55,C56,C61,C63,C65,C7,C71,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C86,D10,D4,D5,D6,D7,D8,D9 |
Chr8:48958894 |
T |
TCC |
2bp_insertion | frameshift_variant | 134 | A13,A18,A2,A20,A22,A23,A25,A3,A6,B10,B101,B106,B11,B111,B112,B114,B115,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B129,B130,B132,B133,B134,B137,B138,B139,B140,B15,B16,B18,B19,B2,B20,B21,B22,B23,B24,B25,B27,B3,B35,B36,B37,B38,B4,B40,B42,B44,B47,B49,B5,B50,B53,B56,B59,B62,B63,B64,B76,B77,B81,B85,B86,B87,B88,B89,B9,B90,B93,B94,B95,B96,B97,B98,C10,C13,C14,C15,C19,C21,C24,C27,C28,C29,C32,C33,C35,C36,C40,C41,C42,C44,C45,C47,C48,C5,C51,C52,C53,C54,C55,C56,C61,C63,C65,C7,C71,C73,C74,C75,C76,C77,C78,C79,C8,C82,C83,C86,D10,D4,D5,D6,D7,D8,D9 |
Chr8:48958906 |
TTA |
T |
2bp_deletion | frameshift_variant | 136 | A10,A11,A13,A18,A2,A20,A22,A23,A25,A3,A6,A7,A9,B10,B101,B106,B108,B111,B112,B113,B114,B115,B118,B119,B12,B121,B123,B124,B125,B126,B130,B131,B132,B133,B134,B137,B138,B139,B140,B15,B16,B19,B2,B20,B21,B24,B25,B27,B28,B3,B33,B35,B36,B37,B38,B4,B40,B42,B44,B47,B49,B50,B56,B59,B60,B62,B63,B76,B77,B81,B83,B85,B86,B87,B88,B89,B90,B93,B94,B95,B96,B98,C10,C13,C14,C15,C24,C27,C28,C29,C3,C31,C32,C33,C35,C36,C41,C42,C43,C44,C45,C47,C48,C51,C52,C53,C54,C55,C57,C59,C61,C62,C63,C65,C7,C71,C72,C73,C74,C75,C76,C77,C78,C8,C81,C82,C83,C86,D10,D3,D4,D5,D6,D7,D8,D9 |
Chr8:48958913 |
A |
AAG |
2bp_insertion | frameshift_variant | 10 | A13,B121,B123,B124,B77,B81,C24,C27,C48,C52 |
Chr8:48959007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr8:48959049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:48960123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr8:48960446 |
AGG |
A |
2bp_deletion | frameshift_variant | 1 | B9 |
Chr8:48960446 |
AGG |
A |
2bp_deletion | CDS_variant | 1 | B9 |
Chr8:48961487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778174.1PF22666
Glyco_hydro_2_N2 40-201 aa
PF00703
Glyco_hydro_2 213-331 aa
PF02836
Glyco_hydro_2_C 345-476 aa
PF18368
Ig_GlcNase 871-949 aa
XP_057778175.1PF00703
Glyco_hydro_2 24-142 aa
PF02836
Glyco_hydro_2_C 156-287 aa
PF18368
Ig_GlcNase 682-760 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778174.1 |
Pfam | PF22666 |
Glyco_hydro_2_N2 | Domain | 40 | 201 | 6.3e-24 | 85.6 | Glycosyl hydrolase 2 galactose-binding domain-like |
XP_057778174.1 |
Pfam | PF00703 |
Glyco_hydro_2 | Domain | 213 | 331 | 5.5e-13 | 50.3 | Glycosyl hydrolases family 2 |
XP_057778174.1 |
Pfam | PF02836 |
Glyco_hydro_2_C | Domain | 345 | 476 | 9.1e-06 | 25.7 | Glycosyl hydrolases family 2, TIM barrel domain |
XP_057778174.1 |
Pfam | PF18368 |
Ig_GlcNase | Domain | 871 | 949 | 2.5e-12 | 47.6 | Exo-beta-D-glucosaminidase Ig-fold domain |
XP_057778175.1 |
Pfam | PF00703 |
Glyco_hydro_2 | Domain | 24 | 142 | 3.6e-13 | 50.9 | Glycosyl hydrolases family 2 |
XP_057778175.1 |
Pfam | PF02836 |
Glyco_hydro_2_C | Domain | 156 | 287 | 6.3e-06 | 26.3 | Glycosyl hydrolases family 2, TIM barrel domain |
XP_057778175.1 |
Pfam | PF18368 |
Ig_GlcNase | Domain | 682 | 760 | 1.4e-12 | 48.4 | Exo-beta-D-glucosaminidase Ig-fold domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。