Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004058`

染色体: Chr08 坐标: 49202781-49205126 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004058`
名称	SmilChr08G004058
描述	uncharacterized SmilChr08G004058
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	49202781 - 49205126 / `-`

ID 对照

NCBI Gene ID	`LOC130996934`
GeneID	`130996934`
locus_tag	`-`
NCBI Name	`LOC130996934`
原始查询	`SmilChr08G004058`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826963]; symbol=AT4G13330; hit=AT4G13330; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826963]; symbol=AT4G13330; hit=AT4G13330; species=arabidopsis; confidence=high
Arabidopsis	`AT4G13330` (AT4G13330) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826963] identity=47.7; qcov=1; evalue=4.32e-114; confidence=high
Rice	`Os04g0510700` - identity=46.2; qcov=1; evalue=1.89e-110; confidence=high
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130996934

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057778195.1`
2	Cytosol	细胞质基质	1.00000	`XP_057778196.1`
3	Cytoplasm	细胞质	0.40000	`XP_057778196.1`
4	Mitochondrion matrix	线粒体基质	0.20000	`XP_057778195.1`
5	Chloroplast	叶绿体	0.20000	`XP_057778195.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:49202940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B33,C60,D7
`Chr8:49203009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,C52
`Chr8:49203083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr8:49204506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B47,B55
`Chr8:49204988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B2,C56,C72
`Chr8:49205013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B78,C27,C37

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922213.1
ACTATCAAAATAAACCCACCCTTAGTGAAAATCCGAAAGTCCGTTGCTTTGGCCGGAACTAGGGCTTTCACTACAAACCACTCTCCATCAATTCCGATCACGCAAAATGTTCAGTGCACTGCGTTTCAACTTGAGATCGAGCCTCCGCCGCTTCTCAACGGCGATTAATCGCCGCCACATCGAGGACGAAGGCGACTGGCTTTACTCCTCCGAGTGGTGGGCCGGCCACCCCTCTTCCAGGCGCAACGTCTTCCGGGAAA...

XM_057922212.1
ACTATCAAAATAAACCCACCCTTAGTGAAAATCCGAAAGTCCGTTGCTTTGGCCGGAACTAGGGCTTTCACTACAAACCACTCTCCATCAATTCCGATCACGCAAAATGTTCAGTGCACTGCGTTTCAACTTGAGATCGAGCCTCCGCCGCTTCTCAACGGCGATTAATCGCCGCCACATCGAGGACGAAGGCGACTGGCTTTACTCCTCCGAGTGGTGGGCCGGCCACCCCTCTTCCAGGCGCAACGTCTTCCGGGAAA...

CDS

2 records

下载 CDS FASTA

LOC130996934
ATGTTCAGTGCACTGCGTTTCAACTTGAGATCGAGCCTCCGCCGCTTCTCAACGGCGATTAATCGCCGCCACATCGAGGACGAAGGCGACTGGCTTTACTCCTCCGAGTGGTGGGCCGGCCACCCCTCTTCCAGGCGCAACGTCTTCCGGGAAAACTCCCGCCATGGAAACGGTGTCGTATCTGTTCTATCTCACCCTTGCTCCAAACCAGACAGATTTTACTGGGGAAAAACTGAAAAATGGCTCCAACAGAGGCGCGA...

LOC130996934
ATGGAAACGGTGTCGTATCTGTTCTATCTCACCCTTGCTCCAAACCAATTTTACTGGGGAAAAACTGAAAAATGGCTCCAACAGAGGCGCGATGAGATATTTCCAGGTTCGAAAAATGGCGGAAACTTCAGAGTTTGTGGTTATGAATGGAGAACGCTTCACTTCAATGACTTCACTCGTGAAAGCACCGTTAAAGTTTTGGTTGCGCGTACGGAAGAAGAAGAAGGAGATGAAGCTGGCTCCGTTTGCGTTATGCAGCA...

Protein

2 records

下载 Protein FASTA

XP_057778195.1
MFSALRFNLRSSLRRFSTAINRRHIEDEGDWLYSSEWWAGHPSSRRNVFRENSRHGNGVVSVLSHPCSKPDRFYWGKTEKWLQQRRDEIFPGSKNGGNFRVCGYEWRTLHFNDFTRESTVKVLVARTEEEEGDEAGSVCVMQQPRCLAVPYVKSMISAGLSTITSCNYELMKNAVLGKQNLNVLCIGHGGGSIPLFMASEIQGAVVHTVEIDPIVVSASTRAMGFPAFTVTSPNGKRARAVPDPLDEVLWKGIHERMLLF...

XP_057778196.1
METVSYLFYLTLAPNQFYWGKTEKWLQQRRDEIFPGSKNGGNFRVCGYEWRTLHFNDFTRESTVKVLVARTEEEEGDEAGSVCVMQQPRCLAVPYVKSMISAGLSTITSCNYELMKNAVLGKQNLNVLCIGHGGGSIPLFMASEIQGAVVHTVEIDPIVVSASTRAMGFPAFTVTSPNGKRARAVPDPLDEVLWKGIHERMLLFSWDAEKFVQESTNVYDIIFIDAYDGEDIFPRKLWDPDSPFLQALGSRLHPDHGTVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器