当前解析结果
SmilChr08G004076| 统一新 Gene ID | SmilChr08G004076 |
|---|---|
| 名称 | SmilChr08G004076 |
| 描述 | uncharacterized SmilChr08G004076 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 49392068 - 49395215 / + |
| NCBI Gene ID | LOC130996958 |
|---|---|
| GeneID | 130996958 |
| locus_tag | - |
| NCBI Name | LOC130996958 |
| 原始查询 | SmilChr08G004076 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:840514]; symbol=AT1G36095; hit=AT1G36095; species=arabidopsis; confidence=weak |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:840514]; symbol=AT1G36095; hit=AT1G36095; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G36095 (AT1G36095)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:840514] identity=51.3; qcov=0.298; evalue=3.03e-09; confidence=weak |
| Rice | -- |
| GO | GO:0003677 (DNA binding) |
| KEGG | - |
| Pfam | PF02892 (zf-BED); PF26664 (zf-BED_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996958 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778232.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057778232.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057778232.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057778232.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057778232.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:49392611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:49392636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B82 |
Chr8:49392672 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B60 |
Chr8:49392672 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B60 |
Chr8:49392702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,B60 |
Chr8:49392703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B36 |
Chr8:49392738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B16,B35,B93,C52 |
Chr8:49392743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B127 |
Chr8:49392753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B127 |
Chr8:49392755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,B55 |
Chr8:49392765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr8:49392767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B134,B43,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778232.1PF02892
zf-BED 17-62 aa
PF26664
zf-BED_2 28-74 aa
XP_057778234.1PF02892
zf-BED 17-53 aa
PF26664
zf-BED_2 28-55 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778232.1 |
Pfam | PF02892 |
zf-BED | Domain | 17 | 62 | 2.5e-05 | 24.9 | BED zinc finger |
XP_057778232.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 28 | 74 | 6.2e-11 | 42.6 | BED-like zinc finger |
XP_057778234.1 |
Pfam | PF02892 |
zf-BED | Domain | 17 | 53 | 4.7e-05 | 24.1 | BED zinc finger |
XP_057778234.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 28 | 55 | 1.3e-06 | 28.8 | BED-like zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。