Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004097`

染色体: Chr08 坐标: 49663275-49670046 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004097`
名称	SmilChr08G004097
描述	probable E3 ubiquitin-protein ligase LUL4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	49663275 - 49670046 / `-`

ID 对照

NCBI Gene ID	`LOC130996936`
GeneID	`130996936`
locus_tag	`-`
NCBI Name	`LOC130996936`
原始查询	`SmilChr08G004097`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase LUL4
产物	probable E3 ubiquitin-protein ligase LUL4
Arabidopsis	`AT3G06140` (LUL4) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819787] identity=57.4; qcov=0.751; evalue=2.27e-107; confidence=high
Rice	`Os05g0397650` (OsRFPHC-8) - identity=56.9; qcov=0.699; evalue=9.92e-97; confidence=high
GO	GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF26192 (RNF157-like_N)
InterPro	-
eggNOG	-
NR	GeneID:130996936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057778201.1`
2	Nucleus	细胞核	0.40000	`XP_057778201.1`
3	Cytosol	细胞质基质	0.20000	`XP_057778204.1`
4	Chromosome	染色体	0.00000	`XP_057778201.1`
5	Centromere	着丝粒	0.00000	`XP_057778201.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:49666290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:49666312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:49666314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B67,C32,C68
`Chr8:49668343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B58,B97
`Chr8:49668363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778201.1

409 aa

204

409

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 151-308 aa PF13920 zf-C3HC4_3 329-375 aa PF13639 zf-RING_2 330-370 aa PF00097 zf-C3HC4 331-369 aa

XP_057778203.1

408 aa

204

408

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 151-308 aa PF13920 zf-C3HC4_3 329-375 aa PF13639 zf-RING_2 330-370 aa PF00097 zf-C3HC4 331-369 aa

XP_057778204.1

392 aa

196

392

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 151-308 aa PF13920 zf-C3HC4_3 329-375 aa PF13639 zf-RING_2 330-370 aa PF00097 zf-C3HC4 331-369 aa

XP_057778205.1

385 aa

192

385

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 151-308 aa PF13920 zf-C3HC4_3 329-375 aa PF13639 zf-RING_2 330-370 aa PF00097 zf-C3HC4 331-369 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778201.1`	Pfam	`PF26192`	RNF157-like_N	Domain	151	308	3e-67	226.6	RNF157-like N-terminal domain
`XP_057778201.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	329	375	4.5e-17	62.3	Zinc finger, C3HC4 type (RING finger)
`XP_057778201.1`	Pfam	`PF13639`	zf-RING_2	Domain	330	370	1.2e-07	32.6	Ring finger domain
`XP_057778201.1`	Pfam	`PF00097`	zf-C3HC4	Domain	331	369	0.00025	21.6	Zinc finger, C3HC4 type (RING finger)
`XP_057778203.1`	Pfam	`PF26192`	RNF157-like_N	Domain	151	308	2.9e-67	226.6	RNF157-like N-terminal domain
`XP_057778203.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	329	375	4.5e-17	62.3	Zinc finger, C3HC4 type (RING finger)
`XP_057778203.1`	Pfam	`PF13639`	zf-RING_2	Domain	330	370	1.2e-07	32.6	Ring finger domain
`XP_057778203.1`	Pfam	`PF00097`	zf-C3HC4	Domain	331	369	0.00024	21.6	Zinc finger, C3HC4 type (RING finger)
`XP_057778204.1`	Pfam	`PF26192`	RNF157-like_N	Domain	151	308	2.8e-67	226.7	RNF157-like N-terminal domain
`XP_057778204.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	329	375	4.2e-17	62.4	Zinc finger, C3HC4 type (RING finger)
`XP_057778204.1`	Pfam	`PF13639`	zf-RING_2	Domain	330	370	1.1e-07	32.7	Ring finger domain
`XP_057778204.1`	Pfam	`PF00097`	zf-C3HC4	Domain	331	369	0.00023	21.7	Zinc finger, C3HC4 type (RING finger)
`XP_057778205.1`	Pfam	`PF26192`	RNF157-like_N	Domain	151	308	2.7e-67	226.7	RNF157-like N-terminal domain
`XP_057778205.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	329	375	4.1e-17	62.4	Zinc finger, C3HC4 type (RING finger)
`XP_057778205.1`	Pfam	`PF13639`	zf-RING_2	Domain	330	370	1.1e-07	32.7	Ring finger domain
`XP_057778205.1`	Pfam	`PF00097`	zf-C3HC4	Domain	331	369	0.00023	21.7	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057922220.1
TAGAAAAAAAAAAAGTCGCTCCAGCCAAAGGAATTGCATAGAACGTCAACTTATTTCAATTTTCAATTCTTTTTAAGTATTTATTCCTCTTTCCAAACGTCAAGTTTTATTCCTCCTCCACCTCCGCCGCCCGCCGCCGCCGCCCGCCGCCGCCATGGGCCTCTCCTGGAGCAAAAGGCGCCGCCACGAGAATCAGCAAGCCCCACCCCCACCACTACCACTTCCCCCACCCCCTCCCACCTTCTCCTCGTCAAACCCCC...

XM_057922218.1
TAGAAAAAAAAAAAGTCGCTCCAGCCAAAGGAATTGCATAGAACGTCAACTTATTTCAATTTTCAATTCTTTTTAAGTATTTATTCCTCTTTCCAAACGTCAAGTTTTATTCCTCCTCCACCTCCGCCGCCCGCCGCCGCCGCCCGCCGCCGCCATGGGCCTCTCCTGGAGCAAAAGGCGCCGCCACGAGAATCAGCAAGCCCCACCCCCACCACTACCACTTCCCCCACCCCCTCCCACCTTCTCCTCGTCAAACCCCC...

CDS

4 records

下载 CDS FASTA

LOC130996936
ATGGGCCTCTCCTGGAGCAAAAGGCGCCGCCACGAGAATCAGCAAGCCCCACCCCCACCACTACCACTTCCCCCACCCCCTCCCACCTTCTCCTCGTCAAACCCCCCTCCGCCACCAACTCCACCGCCCCGGGCCCCGCCCCCCAGCAGCTGCAATCCAGCCACAACCAGCTATGCTTTCGCGGCCAACGCCCCTCATTCAGCCGCCCCCTATCCCGCGCTTCTTCCGCCCCCTTACGCCCCTCCCCCGCCGCCGCCTTA...

Protein

4 records

下载 Protein FASTA

XP_057778201.1
MGLSWSKRRRHENQQAPPPPLPLPPPPPTFSSSNPPPPPTPPPRAPPPSSCNPATTSYAFAANAPHSAAPYPALLPPPYAPPPPPPYNYSYNFSGYYSRPVHMMGHHNYRPYYVPQISGWGPSAAPLPQLPPLQPAPYVDHQSAKKVKNDVNVHKDTIRLQLDDLSPDCHLVTFTFDALVDGRITIFYFAKEGENCKFSPVYPEIVPVKIPFQKGLGQKFCQPSGTGVDLGFFDTDDLSKPVPEEDIYPLVIIAESCQAS...

XP_057778203.1
MGLSWSKRRRHENQQAPPPPLPLPPPPPTFSSSNPPPPPTPPPRAPPPSSCNPATTSYAFAANAPHSAAPYPALLPPPYAPPPPPPYNYSYNFSGYYSRPVHMMGHHNYRPYYVPQISGWGPSAAPLPQLPPLQPAPYVDHQSAKKVKNDVNVHKDTIRLQLDDLSPDCHLVTFTFDALVDGRITIFYFAKEGENCKFSPVYPEIVPVKIPFQKGLGQKFCQPSGTGVDLGFFDTDDLSKPVPEEDIYPLVIIAESCQAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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