当前解析结果
SmilChr08G004099| 统一新 Gene ID | SmilChr08G004099 |
|---|---|
| 名称 | SmilChr08G004099 |
| 描述 | uncharacterized SmilChr08G004099 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 49680341 - 49681270 / - |
| NCBI Gene ID | LOC130998609 |
|---|---|
| GeneID | 130998609 |
| locus_tag | - |
| NCBI Name | LOC130998609 |
| 原始查询 | SmilChr08G004099 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P0604E01.25; symbol=P0604E01.25; hit=Os08g0561000; species=rice; confidence=low |
| 产物 | P0604E01.25; symbol=P0604E01.25; hit=Os08g0561000; species=rice; confidence=low |
| Arabidopsis | AT1G66235 (AT1G66235)no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=23.5; qcov=0.484; evalue=7.68e-11; confidence=weak |
| Rice | Os08g0561000 (P0604E01.25)- identity=28.9; qcov=0.608; evalue=4.8e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998609 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780006.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057780006.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057780006.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057780006.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057780006.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:49680371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,C87,D1 |
Chr8:49680372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr8:49680508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr8:49680517 |
G |
A |
EMS_canonical_SNV | stop_gained | 41 | A1,A13,A21,A7,B102,B103,B115,B118,B121,B123,B128,B14,B16,B27,B30,B52,B61,B67,B68,B69,B72,B76,B79,B90,B92,C11,C17,C18,C2,C30,C52,C58,C60,C65,C69,C78,C81,C83,D1,D5,D9 |
Chr8:49680570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:49680587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:49680640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr8:49680657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B102,C22 |
Chr8:49680669 |
TG |
T |
1bp_deletion | frameshift_variant | 57 | A16,A20,A21,A22,A25,A4,A9,B101,B111,B117,B133,B134,B2,B20,B21,B23,B31,B32,B35,B36,B4,B44,B62,B63,B64,B68,B76,B8,B81,B82,B85,B88,B91,B96,B99,C15,C24,C26,C31,C32,C35,C37,C4,C40,C48,C54,C55,C60,C62,C64,C71,C79,C80,C86,C9,D3,D8 |
Chr8:49680680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B128 |
Chr8:49680754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B114,C15 |
Chr8:49680758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。