Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004114`

染色体: Chr08 坐标: 49978255-49979801 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004114`
名称	SmilChr08G004114
描述	E3 ubiquitin-protein ligase ATL31-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	49978255 - 49979801 / `+`

ID 对照

NCBI Gene ID	`LOC130998862`
GeneID	`130998862`
locus_tag	`-`
NCBI Name	`LOC130998862`
原始查询	`SmilChr08G004114`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase ATL31-like
产物	E3 ubiquitin-protein ligase ATL31-like
Arabidopsis	`AT3G05200` (ATL6) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819684] identity=54.3; qcov=0.784; evalue=6.77e-89; confidence=high
Rice	`Os09g0468300` - identity=46.5; qcov=0.743; evalue=3.89e-62; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:130998862

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057780269.1`
2	Nucleus	细胞核	0.00000	`XP_057780269.1`
3	Chromosome	染色体	0.00000	`XP_057780269.1`
4	Centromere	着丝粒	0.00000	`XP_057780269.1`
5	Chromatin	染色质	0.00000	`XP_057780269.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:49978378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:49978380`	`T`	`TC`	1bp_insertion	frameshift_variant	96	A1,A14,A16,A2,A20,A21,A23,A24,A25,A5,A6,A9,B1,B101,B103,B11,B113,B114,B119,B12,B127,B129,B130,B131,B133,B138,B23,B27,B28,B32,B35,B37,B42,B43,B45,B48,B5,B50,B53,B57,B58,B6,B60,B62,B65,B67,B7,B70,B77,B78,B80,B83,B84,B88,B94,B98,C14,C15,C17,C18,C19,C2,C20,C21,C25,C27,C28,C31,C32,C34,C37,C39,C40,C41,C45,C48,C49,C57,C6,C61,C62,C63,C65,C67,C68,C70,C74,C75,C77,C85,C9,D2,D4,D5,D6,D9
`Chr8:49978591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr8:49978597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr8:49978691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr8:49978713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr8:49978843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:49978872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr8:49978989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:49978990`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C35
`Chr8:49979004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr8:49979057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B47,B55,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780269.1

385 aa

192

385

zf-RING_11

zf-C3HC4_2

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-rbx1

PF17123 zf-RING_11 123-152 aa PF13923 zf-C3HC4_2 123-165 aa PF13639 zf-RING_2 123-166 aa PF13445 zf-RING_UBOX 124-163 aa PF00097 zf-C3HC4 124-165 aa PF12678 zf-rbx1 127-166 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780269.1`	Pfam	`PF17123`	zf-RING_11	Domain	123	152	1.3e-10	41.5	RING-like zinc finger
`XP_057780269.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	123	165	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057780269.1`	Pfam	`PF13639`	zf-RING_2	Domain	123	166	9.3e-15	55.3	Ring finger domain
`XP_057780269.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	124	163	1.4e-05	25.7	RING-type zinc-finger
`XP_057780269.1`	Pfam	`PF00097`	zf-C3HC4	Domain	124	165	1.2e-06	28.9	Zinc finger, C3HC4 type (RING finger)
`XP_057780269.1`	Pfam	`PF12678`	zf-rbx1	Domain	127	166	4.3e-08	34.0	RING-H2 zinc finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924286.1
CGCCACTCTTGACTCTCCATCACAATGCAGCAGGCACCACTACTATATATACAAACCTAGCTACCTACAAAAGCATTGATTTACCAAACCTATCAAAATGAAGAGCCACGGCACTTCCTTCTTCGTCTTCCTCCTCCTCCTCCTCCTCTCGCCGGCGGCCGCGCAGCCGGGCGCCTCCACGGACAACAACAACCCCGACATGTACGCGCGCTTCAGCCCGTCGATGGCCGTCATCATCGCCGTCCTCGTCGCCGCTCTCT...

CDS

1 records

下载 CDS FASTA

LOC130998862
ATGAAGAGCCACGGCACTTCCTTCTTCGTCTTCCTCCTCCTCCTCCTCCTCTCGCCGGCGGCCGCGCAGCCGGGCGCCTCCACGGACAACAACAACCCCGACATGTACGCGCGCTTCAGCCCGTCGATGGCCGTCATCATCGCCGTCCTCGTCGCCGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCTACGACGCCTCCGCCGCCGGCGGCAGCATCGCCCGCGGCGGCCTCTCCCTGCGCGCACG...

Protein

1 records

下载 Protein FASTA

XP_057780269.1
MKSHGTSFFVFLLLLLLSPAAAQPGASTDNNNPDMYARFSPSMAVIIAVLVAALFFMGFFSIYIRHCYDASAAGGSIARGGLSLRARRAAAAARGLDASVIETFPTFSYSEVKGHKIGKGALECAVCLNEFEDDETLRLLPKCDHVFHPECIDAWLASHTTCPVCRANLVPADPAEPAHDGDAVGRNEEIVVQVDDEDDDHHDDDRRPSEQNPSSELPARPTRSWSIRRPKMLGFGKFRSHSTGHSLVQPGENLERFTLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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