Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004118`

染色体: Chr08 坐标: 50032908-50036715 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004118`
名称	SmilChr08G004118
描述	uncharacterized SmilChr08G004118
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	50032908 - 50036715 / `+`

ID 对照

NCBI Gene ID	`LOC130998867`
GeneID	`130998867`
locus_tag	`-`
NCBI Name	`LOC130998867`
原始查询	`SmilChr08G004118`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transport protein particle (TRAPP) component [Source:NCBI gene (formerly Entrezgene);Acc:819661]; symbol=AT3G05000; hit=AT3G05000; species=arabidopsis; confidence=high
产物	Transport protein particle (TRAPP) component [Source:NCBI gene (formerly Entrezgene);Acc:819661]; symbol=AT3G05000; hit=AT3G05000; species=arabidopsis; confidence=high
Arabidopsis	`AT3G05000` (AT3G05000) Transport protein particle (TRAPP) component [Source:NCBI gene (formerly Entrezgene);Acc:819661] identity=76.6; qcov=1; evalue=6.33e-101; confidence=high
Rice	`Os09g0244900` - identity=74.9; qcov=1; evalue=6.49e-101; confidence=high
GO	GO:0005801 (cis-Golgi network); GO:0005802 (trans-Golgi network); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0030008 (TRAPP complex); GO:0043087 (regulation of GTPase activity)
KEGG	-
Pfam	PF04051 (TRAPP)
InterPro	-
eggNOG	-
NR	GeneID:130998867

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057780272.1`
2	Nucleus	细胞核	0.00000	`XP_057780272.1`
3	Chromosome	染色体	0.00000	`XP_057780272.1`
4	Centromere	着丝粒	0.00000	`XP_057780272.1`
5	Chromatin	染色质	0.00000	`XP_057780272.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:50033185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:50035150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:50035609`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B132,D11
`Chr8:50035609`	`AG`	`A`	1bp_deletion	CDS_variant	2	B132,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780272.1

190 aa

190

TRAPP

PF04051 TRAPP 12-166 aa

XP_057780273.1

175 aa

175

TRAPP

PF04051 TRAPP 12-174 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780272.1`	Pfam	`PF04051`	TRAPP	Family	12	166	2.2e-38	132.1	Transport protein particle (TRAPP) component
`XP_057780273.1`	Pfam	`PF04051`	TRAPP	Family	12	174	7.2e-40	137.0	Transport protein particle (TRAPP) component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924290.1
GTTTATTATTGGAAAAAATGTAAAGAGAAAAACTAGGTGATTTTTTAACGCTGGGCAGTTCGGAAACTGAAGGGTGGAGTTTATGAATGGAGTCGCCTAACAACAAAAACACAAAATTTTACTAACAGTTTAGGGTTCCAAAATCAGAAGATCAGATCACATTTCAAAATCGAAGTCTACGCTCCATTTGATTTTCGATCTCCCAATACACAGACGCAAAGGAGAGAGAGGAACCGGAAATGGTGAGGGAGGTATCGGAA...

XM_057924289.1
AAAAAATGTAAAGAGAAAAACTAGGTGATTTTTTAACGCTGGGCAGTTCGGAAACTGAAGGGTGGAGTTTATGAATGGAGTCGCCTAACAACAAAAACACAAAATTTTACTAACAGTTTAGGGTTCCAAAATCAGAAGATCAGATCACATTTCAAAATCGAAGTCTACGCTCCATTTGATTTTCGATCTCCCAATACACAGACGCAAAGGAGAGAGAGGAACCGGAAATGGTGAGGGAGGTATCGGAAAGCTGTGTGGAG...

CDS

2 records

下载 CDS FASTA

LOC130998867
ATGGTGAGGGAGGTATCGGAAAGCTGTGTGGAGAGTTTGCTGGCGGAGATAGTGTTGTCGTATTGCTCAGGCTTCTACGCCAACAAGCCCGAACTTGCAGCGCGGAGGATCGAAGCCATCGGCTTTCAGGTCGGTCACCAGTTAAGTGAAAGGTACACAATGGATCGACCAAGGTTCACCGATAACCTGGAGGCCATCAAGTTTATCTGCAAGGACTTTTGGTCTGAACTCTTCAAGAAACAGATAGATAACTTAAAGAC...

Protein

2 records

下载 Protein FASTA

XP_057780272.1
MVREVSESCVESLLAEIVLSYCSGFYANKPELAARRIEAIGFQVGHQLSERYTMDRPRFTDNLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLAHMSIDPSVQASGNIQDPSAMAENKSAQATGMHLYFPCGIIRGALSNLGIACAVSADISNLPACELITLKLHSIIGAIYRGDTLVTT

XP_057780273.1
MVREVSESCVESLLAEIVLSYCSGFYANKPELAARRIEAIGFQVGHQLSERYTMDRPRFTDNLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLAHMSIDPSVQASGNIQDPSAMAENKSAQATGMHLYFPCGIIRGALSNLGIACAVSADISNLPACSFVIRIKA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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