当前解析结果
SmilChr08G004129| 统一新 Gene ID | SmilChr08G004129 |
|---|---|
| 名称 | SmilChr08G004129 |
| 描述 | aspartic proteinase 36-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 50162633 - 50166929 / + |
| NCBI Gene ID | LOC130998880 |
|---|---|
| GeneID | 130998880 |
| locus_tag | - |
| NCBI Name | LOC130998880 |
| 原始查询 | SmilChr08G004129 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartic proteinase 36-like |
| 产物 | aspartic proteinase 36-like |
| Arabidopsis | AT5G43100 (AT5G43100)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:834326] identity=64.4; qcov=0.899; evalue=0; confidence=high |
| Rice | Os07g0592200 (OsAP65)- identity=70.6; qcov=0.873; evalue=0; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998880 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780286.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057780286.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780286.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780286.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780286.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:50164662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:50164781 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A14,B103 |
Chr8:50164781 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A14,B103 |
Chr8:50164799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B103,B137 |
Chr8:50164822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B103,B137 |
Chr8:50164827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B103,B137 |
Chr8:50165058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,C11,C69 |
Chr8:50165296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,C11,C69 |
Chr8:50165487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:50165656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B80 |
Chr8:50165665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,C11,C69 |
Chr8:50166110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780286.1PF14543
TAXi_N 90-253 aa
PF00026
Asp 90-428 aa
PF14541
TAXi_C 274-428 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780286.1 |
Pfam | PF14543 |
TAXi_N | Domain | 90 | 253 | 2.1e-35 | 123.2 | Xylanase inhibitor N-terminal |
XP_057780286.1 |
Pfam | PF00026 |
Asp | Domain | 90 | 428 | 2.6e-33 | 116.5 | Eukaryotic aspartyl protease |
XP_057780286.1 |
Pfam | PF14541 |
TAXi_C | Domain | 274 | 428 | 1.1e-29 | 104.0 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。