当前解析结果
SmilChr08G004144| 统一新 Gene ID | SmilChr08G004144 |
|---|---|
| 名称 | SmilChr08G004144 |
| 描述 | uncharacterized SmilChr08G004144 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 50489106 - 50490008 / + |
| NCBI Gene ID | LOC130998621 |
|---|---|
| GeneID | 130998621 |
| locus_tag | - |
| NCBI Name | LOC130998621 |
| 原始查询 | SmilChr08G004144 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832189]; symbol=AT5G20660; hit=AT5G20660; species=arabidopsis; confidence=medium |
| 产物 | Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832189]; symbol=AT5G20660; hit=AT5G20660; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G20660 (AT5G20660)Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832189] identity=47.3; qcov=0.759; evalue=9.53e-36; confidence=medium |
| Rice | Os04g0519925- identity=50; qcov=0.544; evalue=8.41e-33; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998621 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057780017.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057780017.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057780017.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780017.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:50489159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,B75,B86,B9,C75 |
Chr8:50489200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B71,B89,C70 |
Chr8:50489212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,C64,C67 |
Chr8:50489288 |
GGT |
G |
2bp_deletion | frameshift_variant | 4 | A19,B84,C71,D2 |
Chr8:50489288 |
GGT |
G |
2bp_deletion | CDS_variant | 4 | A19,B84,C71,D2 |
Chr8:50489319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:50489421 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C13 |
Chr8:50489421 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C13 |
Chr8:50489434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C75 |
Chr8:50489435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr8:50489867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,B75,B86,B9,C75 |
Chr8:50489896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。