当前解析结果
SmilChr08G004156| 统一新 Gene ID | SmilChr08G004156 |
|---|---|
| 名称 | SmilChr08G004156 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 50732314 - 50734161 / + |
| NCBI Gene ID | LOC130998627 |
|---|---|
| GeneID | 130998627 |
| locus_tag | - |
| NCBI Name | LOC130998627 |
| 原始查询 | SmilChr08G004156 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=32.6; qcov=0.782; evalue=3.85e-87; confidence=low |
| Rice | Os06g0166100- identity=36.2; qcov=0.915; evalue=2.18e-121; confidence=medium |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998627 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780021.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057780021.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780021.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780021.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780021.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:50732398 |
C |
T |
EMS_canonical_SNV | stop_gained | 19 | A5,B1,B100,B113,B12,B140,B41,B42,B43,B44,B51,B52,B59,B89,B97,C2,C32,C68,C82 |
Chr8:50732400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B132,B54,B86,C83 |
Chr8:50732443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:50732511 |
G |
GGT |
2bp_insertion | frameshift_variant | 12 | A10,A8,B112,B14,B33,B47,B63,B84,C34,C78,C82,C86 |
Chr8:50732513 |
CAG |
C |
2bp_deletion | frameshift_variant | 12 | A10,A8,B112,B14,B33,B47,B63,B84,C34,C78,C82,C86 |
Chr8:50732521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B47,C60,C63,C78 |
Chr8:50732525 |
GT |
G |
1bp_deletion | frameshift_variant | 6 | A10,A20,B112,B63,C34,C86 |
Chr8:50732594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:50732603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:50732605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,D10 |
Chr8:50732606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B45,C26,C68,D5 |
Chr8:50732694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780021.1PF21056
ZSWIM1-3_RNaseH-like 114-231 aa
PF10551
MULE 149-243 aa
PF04434
SWIM 430-462 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780021.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 114 | 231 | 3.2e-11 | 44.0 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057780021.1 |
Pfam | PF10551 |
MULE | Domain | 149 | 243 | 2.2e-30 | 105.6 | MULE transposase domain |
XP_057780021.1 |
Pfam | PF04434 |
SWIM | Domain | 430 | 462 | 3.3e-06 | 27.2 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。