Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004161`

染色体: Chr08 坐标: 50889040-50892129 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004161`
名称	SmilChr08G004161
描述	zinc finger transcription factor YY1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	50889040 - 50892129 / `-`

ID 对照

NCBI Gene ID	`LOC130998898`
GeneID	`130998898`
locus_tag	`-`
NCBI Name	`LOC130998898`
原始查询	`SmilChr08G004161`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger transcription factor YY1
产物	zinc finger transcription factor YY1
Arabidopsis	`AT4G06634` (YY1) zinc finger (C2H2 type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:826093] identity=68.4; qcov=0.876; evalue=3.1e-148; confidence=high
Rice	`Os02g0551900` - identity=61.9; qcov=0.664; evalue=4.71e-113; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005667 (transcription regulator complex); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0031519 (PcG protein complex)
KEGG	-
Pfam	PF00096 (zf-C2H2)
InterPro	-
eggNOG	-
NR	GeneID:130998898

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780312.1`
2	Nucleoplasm	核质	1.00000	`XP_057780312.1`
3	Nuclear body	核内小体	0.20000	`XP_057780312.1`
4	Chromosome	染色体	0.20000	`XP_057780313.1`
5	Centromere	着丝粒	0.00000	`XP_057780312.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:50889237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:50889239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B95,C20
`Chr8:50889318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:50889384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:50889470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr8:50889473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B95,C20
`Chr8:50889917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B95,C20
`Chr8:50890172`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	D11
`Chr8:50890172`	`GAC`	`G`	2bp_deletion	CDS_variant	1	D11
`Chr8:50890176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:50890183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B121,C80,D3
`Chr8:50891616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780312.1

391 aa

196

391

zf-C2H2

PF00096 zf-C2H2 78-101 aa PF00096 zf-C2H2 184-208 aa

XP_057780313.1

390 aa

195

390

zf-C2H2

PF00096 zf-C2H2 78-101 aa PF00096 zf-C2H2 184-208 aa

XP_057780314.1

373 aa

186

373

zf-C2H2

PF00096 zf-C2H2 78-101 aa PF00096 zf-C2H2 136-160 aa PF00096 zf-C2H2 166-190 aa

XP_057780315.1

372 aa

186

372

zf-C2H2

PF00096 zf-C2H2 78-101 aa PF00096 zf-C2H2 136-160 aa PF00096 zf-C2H2 166-190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780312.1`	Pfam	`PF00096`	zf-C2H2	Domain	78	101	5.9e-14	52.3	Zinc finger, C2H2 type
`XP_057780312.1`	Pfam	`PF00096`	zf-C2H2	Domain	184	208	5.9e-14	52.3	Zinc finger, C2H2 type
`XP_057780313.1`	Pfam	`PF00096`	zf-C2H2	Domain	78	101	5.8e-14	52.4	Zinc finger, C2H2 type
`XP_057780313.1`	Pfam	`PF00096`	zf-C2H2	Domain	184	208	5.8e-14	52.4	Zinc finger, C2H2 type
`XP_057780314.1`	Pfam	`PF00096`	zf-C2H2	Domain	78	101	2e-18	66.4	Zinc finger, C2H2 type
`XP_057780314.1`	Pfam	`PF00096`	zf-C2H2	Domain	136	160	2e-18	66.4	Zinc finger, C2H2 type
`XP_057780314.1`	Pfam	`PF00096`	zf-C2H2	Domain	166	190	2e-18	66.4	Zinc finger, C2H2 type
`XP_057780315.1`	Pfam	`PF00096`	zf-C2H2	Domain	78	101	2e-18	66.4	Zinc finger, C2H2 type
`XP_057780315.1`	Pfam	`PF00096`	zf-C2H2	Domain	136	160	2e-18	66.4	Zinc finger, C2H2 type
`XP_057780315.1`	Pfam	`PF00096`	zf-C2H2	Domain	166	190	2e-18	66.4	Zinc finger, C2H2 type

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057924331.1
ACCGGTTGTCTCTTGCAATCCCGAACCGGTGTTGGAAGTGAAACAATGGCGGATTAAAACACTCCTCATTACTTTCTCTCTCTATAAACTTCACAGCGCTCACTCTCTATATTCTGATACGAGTTTACTCTCTCGCACAACCCTTCATACCCTAACCCTAATTTCCGCTGCCGAAGTACTACTTCTCCTATTGATTCAAGAAATTGAGGGCGAGCGATAACCGAAGCAATGGAGACTCACATCAGCCATAGTCTGTTTGA...

XM_057924330.1
CCGAACCGGTGTTGGAAGTGAAACAATGGCGGATTAAAACACTCCTCATTACTTTCTCTCTCTATAAACTTCACAGCGCTCACTCTCTATATTCTGATACGAGTTTACTCTCTCGCACAACCCTTCATACCCTAACCCTAATTTCCGCTGCCGAAGTACTACTTCTCCTATTGATTCAAGAAATTGAGGGCGAGCGATAACCGAAGCAATGGAGACTCACATCAGCCATAGTCTGTTTGACAGACGGCCCATATCCCGCT...

CDS

4 records

下载 CDS FASTA

LOC130998898
ATGGAGACTCACATCAGCCATAGTCTGTTTGACAGACGGCCCATATCCCGCTCTAGAGGCCCCGCCGTTAAATGGTTCAAAGAGTGGGTGCCGCAAGATATTGTCTCAAATGGTGGGAAATGCCTTGTCTTGAAATGGGTTAATGAGGCGACGTTGAGGGCCATGAAGGAGAAGTCGAAGGAGCCAGATGTGGTGGAGCCCGAGCCTGAACCGACAACGGAAGTGCTCTTCTTGTGCAGTTATGAAGGCTGTGGAAAGAC...

Protein

4 records

下载 Protein FASTA

XP_057780312.1
METHISHSLFDRRPISRSRGPAVKWFKEWVPQDIVSNGGKCLVLKWVNEATLRAMKEKSKEPDVVEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYENCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKVSKLASQTSLCHGHPTQKAFSLDFNLRSHMKTHAQENYHICPYADCGKRYAHEYKLKNHIASHHEKANVMETPKYVMPPEKPVKTPKSTTGPASSDRPYACPYEGCEKAYIHEYK...

XP_057780313.1
METHISHSLFDRRPISRSRGPAVKWFKEWVPQDIVSNGGKCLVLKWVNEATLRAMKEKSKEPDVVEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYENCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKVSKLASQTSLCHGHPTQKAFSLDFNLRSHMKTHAQENYHICPYADCGKRYAHEYKLKNHIASHHEKNVMETPKYVMPPEKPVKTPKSTTGPASSDRPYACPYEGCEKAYIHEYKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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