当前解析结果
SmilChr08G004170| 统一新 Gene ID | SmilChr08G004170 |
|---|---|
| 名称 | SmilChr08G004170 |
| 描述 | anthocyanidin reductase ((2S)-flavan-3-ol-forming)-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 51006962 - 51016059 / - |
| NCBI Gene ID | LOC130998907 |
|---|---|
| GeneID | 130998907 |
| locus_tag | - |
| NCBI Name | LOC130998907 |
| 原始查询 | SmilChr08G004170 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | anthocyanidin reductase ((2S)-flavan-3-ol-forming)-like |
| 产物 | anthocyanidin reductase ((2S)-flavan-3-ol-forming)-like |
| Arabidopsis | AT1G61720 (BAN)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842469] identity=32.7; qcov=0.991; evalue=4.29e-44; confidence=low |
| Rice | Os07g0601100 (DHFR)- identity=43.5; qcov=1.02; evalue=3.17e-91; confidence=medium |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998907 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780327.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057780327.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780327.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780327.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780327.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:51007132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B139,B22,C40,C79 |
Chr8:51007162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B139,B22,C40,C79 |
Chr8:51007380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr8:51007424 |
CGT |
C |
2bp_deletion | frameshift_variant | 2 | B16,B44 |
Chr8:51007424 |
CGT |
C |
2bp_deletion | CDS_variant | 2 | B16,B44 |
Chr8:51007571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:51007613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B26,C75,C77 |
Chr8:51014105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B26,C75,C77 |
Chr8:51014146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,C31,C65 |
Chr8:51014184 |
GC |
G |
1bp_deletion | frameshift_variant | 6 | A1,A15,B12,C64,C66,C67 |
Chr8:51014222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,B37,C31,C65 |
Chr8:51014244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B121,C80,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780327.1PF05368
NmrA 2-123 aa
PF01370
Epimerase 4-250 aa
PF16363
GDP_Man_Dehyd 5-125 aa
PF01073
3Beta_HSD 6-180 aa
PF07993
NAD_binding_4 6-214 aa
PF13460
NAD_binding_10 8-129 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780327.1 |
Pfam | PF05368 |
NmrA | Family | 2 | 123 | 6e-07 | 30.1 | NmrA-like family |
XP_057780327.1 |
Pfam | PF01370 |
Epimerase | Family | 4 | 250 | 3.5e-23 | 83.0 | NAD dependent epimerase/dehydratase family |
XP_057780327.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 5 | 125 | 1.8e-09 | 38.2 | GDP-mannose 4,6 dehydratase |
XP_057780327.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 6 | 180 | 1.7e-14 | 54.2 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057780327.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 6 | 214 | 1.5e-07 | 31.6 | Male sterility protein |
XP_057780327.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 8 | 129 | 1.2e-06 | 29.2 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。