Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004193`

染色体: Chr08 坐标: 51326938-51329955 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004193`
名称	SmilChr08G004193
描述	exosome complex component RRP41 homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	51326938 - 51329955 / `+`

ID 对照

NCBI Gene ID	`LOC130998927`
GeneID	`130998927`
locus_tag	`-`
NCBI Name	`LOC130998927`
原始查询	`SmilChr08G004193`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exosome complex component RRP41 homolog
产物	exosome complex component RRP41 homolog
Arabidopsis	`AT3G61620` (RRP41) 3'-5'-exoribonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:825335] identity=83; qcov=1; evalue=2.54e-144; confidence=high
Rice	`Os09g0252000` - identity=83.1; qcov=1; evalue=6.84e-148; confidence=high
GO	GO:0000176 (nuclear exosome (RNase complex)); GO:0000177 (cytoplasmic exosome (RNase complex)); GO:0005730 (nucleolus); GO:0016075 (rRNA catabolic process); GO:0034427 (GO:0034427); GO:0034475 (U4 snRNA 3'-end processing); GO:0071028 (nuclear mRNA surveillance); GO:0071051 (poly(A)-dependent snoRNA 3'-end processing)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01138 (RNase_PH); PF03725 (RNase_PH_C)
InterPro	-
eggNOG	-
NR	GeneID:130998927

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780343.1`
2	Nucleoplasm	核质	1.00000	`XP_057780344.1`
3	Cytoplasm	细胞质	0.80000	`XP_057780343.1`
4	Nucleolus	核仁	0.80000	`XP_057780344.1`
5	Cytosol	细胞质基质	0.80000	`XP_057780344.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:51327231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B7,C78
`Chr8:51327340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B41,B59,C60,C81
`Chr8:51327341`	`A`	`AAT`	2bp_insertion	frameshift_variant	5	B110,B41,B59,C60,C81
`Chr8:51327341`	`A`	`AAT`	2bp_insertion	CDS_variant	5	B110,B41,B59,C60,C81
`Chr8:51327387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B129
`Chr8:51328273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B41
`Chr8:51328765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr8:51328778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr8:51329355`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B104,B129
`Chr8:51329355`	`TC`	`T`	1bp_deletion	CDS_variant	2	B104,B129
`Chr8:51329365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B129
`Chr8:51329366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780343.1

244 aa

122

244

RNase_PH

RNase_PH_C

PF01138 RNase_PH 18-148 aa PF03725 RNase_PH_C 151-196 aa

XP_057780344.1

241 aa

120

241

RNase_PH

RNase_PH_C

PF01138 RNase_PH 18-148 aa PF03725 RNase_PH_C 151-216 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780343.1`	Pfam	`PF01138`	RNase_PH	Domain	18	148	5.5e-42	144.0	3' exoribonuclease family, domain 1
`XP_057780343.1`	Pfam	`PF03725`	RNase_PH_C	Domain	151	196	1.4e-08	35.3	3' exoribonuclease family, domain 2
`XP_057780344.1`	Pfam	`PF01138`	RNase_PH	Domain	18	148	5.1e-42	144.1	3' exoribonuclease family, domain 1
`XP_057780344.1`	Pfam	`PF03725`	RNase_PH_C	Domain	151	216	4.7e-14	52.8	3' exoribonuclease family, domain 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924360.1
CTCGCCTCACCGCCTCTTCCTTGTTACGCTCAAAAGTTCTCACCAAAACCACCACCACCTCTGCGGCGTCTCTCTCTCTCTCTAAGATGGAGTTTGTTAATCCTGAAGGTCTTCGATTAGACGGTCGCCGTCCCATGGAGATGAGACAACTTCGTGCAGAAATAGGCGTAGTTTCAAAAGCCGACGGCTCAGCTGTTTTTGAGATGGGAAACACTAAAGTCATTGCGGCCGTTTATGGCCCCAGAGAGGTCCAAAATAGG...

XM_057924361.1
CTCGCCTCACCGCCTCTTCCTTGTTACGCTCAAAAGTTCTCACCAAAACCACCACCACCTCTGCGGCGTCTCTCTCTCTCTCTAAGATGGAGTTTGTTAATCCTGAAGGTCTTCGATTAGACGGTCGCCGTCCCATGGAGATGAGACAACTTCGTGCAGAAATAGGCGTAGTTTCAAAAGCCGACGGCTCAGCTGTTTTTGAGATGGGAAACACTAAAGTCATTGCGGCCGTTTATGGCCCCAGAGAGGTCCAAAATAGG...

CDS

2 records

下载 CDS FASTA

LOC130998927
ATGGAGTTTGTTAATCCTGAAGGTCTTCGATTAGACGGTCGCCGTCCCATGGAGATGAGACAACTTCGTGCAGAAATAGGCGTAGTTTCAAAAGCCGACGGCTCAGCTGTTTTTGAGATGGGAAACACTAAAGTCATTGCGGCCGTTTATGGCCCCAGAGAGGTCCAAAATAGGAGTCAACAAAGTAATGATCAGGCACTGGTACGCTGTGAGTATAGCATGGCTAATTTCAGTACTGGAGATCGAATGAGGAAACCTAA...

Protein

2 records

下载 Protein FASTA

XP_057780343.1
MEFVNPEGLRLDGRRPMEMRQLRAEIGVVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQSNDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMSDIVTSCSAGYLNGTPLLDLNYMEDSAGGPDVTVGILPKLDKVTLLQVLSNALIFRFVVFAWSRWISLLFWLAKALESTYFSFSLELTPPTTSSS

XP_057780344.1
MEFVNPEGLRLDGRRPMEMRQLRAEIGVVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQSNDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMSDIVTSCSAGYLNGTPLLDLNYMEDSAGGPDVTVGILPKLDKVTLLQMDSKLQMETFETVMQLAIEGCKAVASYIREVLLENTKQLESRRGV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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