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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr08G004196

Chromosome: Chr08 Coordinates: 51366041-51367970 Strand: + Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr08G004196
NameSmilChr08G004196
DescriptionGDSL esterase/lipase At4g01130-like
Chromosome / SeqIDChr08 / NC_080394.1
Coordinates and Strand51366041 - 51367970 / +

ID Mapping

NCBI Gene IDLOC130998935
GeneID130998935
locus_tag-
NCBI NameLOC130998935
Original querySmilChr08G004196

Open ID mapping

Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
DescriptionGDSL esterase/lipase At4g01130-like
ProductGDSL esterase/lipase At4g01130-like
ArabidopsisAT4G01130 (AT4G01130)
GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828207]
identity=57; qcov=0.956; evalue=2.1e-154; confidence=high
RiceOs06g0160200 (OsGELP80)
-
identity=58.3; qcov=0.918; evalue=5.48e-158; confidence=high
GOGO:0016788 (hydrolase activity, acting on ester bonds)
KEGG-
PfamPF00657 (Lipase_GDSL)
InterPro-
eggNOG-
NRGeneID:130998935

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Secreted 分泌到胞外 1.00000 XP_057780355.1
2 Cell wall 细胞壁 0.20000 XP_057780355.1
3 Nucleus 细胞核 0.00000 XP_057780355.1
4 Chromosome 染色体 0.00000 XP_057780355.1
5 Centromere 着丝粒 0.00000 XP_057780355.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr8:51366145 C T EMS_canonical_SNV CDS_variant 1 C22
Chr8:51366187 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:51366245 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:51366532 G A EMS_canonical_SNV CDS_variant 1 C83
Chr8:51367152 G A EMS_canonical_SNV CDS_variant 4 B101,B69,B73,C23
Chr8:51367156 G A EMS_canonical_SNV CDS_variant 5 B108,B5,B54,C73,C9
Chr8:51367194 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:51367320 AG A 1bp_deletion frameshift_variant 39 A11,A2,A25,A3,A4,A6,A8,B110,B117,B123,B130,B18,B19,B22,B3,B30,B33,B37,B5,B53,B62,B65,B70,B75,B9,B92,B97,C16,C32,C37,C40,C42,C45,C5,C50,C56,C6,C68,C9
Chr8:51367358 G A EMS_canonical_SNV CDS_variant 5 B121,B27,B69,C78,D1
Chr8:51367430 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:51367656 AT A 1bp_deletion frameshift_variant 6 A19,B16,B2,B78,C82,D11
Chr8:51367692 C T EMS_canonical_SNV CDS_variant 4 B33,B49,C32,C68

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057780355.1
389 aa
N
1
194
389
Lipase_GDSL
C
PF00657 Lipase_GDSL 41-367 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057780355.1 Pfam PF00657 Lipase_GDSL Family 41 367 4e-46 158.5 GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057924372.1
TGAGCAAACAAAGAAATGGACCAACAAACTCCACATGAAAAACATGCAATTATTTTCAGACAATTCTTGGTTTCTTGGATAGTTTTGATGACAATGTCAGCTTCCATGATCAATGCAAAATGCTCATTCGAGGCCATTTTCGCCTTCGGGGACTCGAACACCGATACAGGAGGTTTTTTTGCTGCTTTCCCATCTCAGCCATCTCCTAATGGCATGACCTATTTCAGTAGGCCGACTGGCCGACCTTCTGATGGGAGGCT...

CDS

1 records

Download CDS FASTA
LOC130998935
ATGGACCAACAAACTCCACATGAAAAACATGCAATTATTTTCAGACAATTCTTGGTTTCTTGGATAGTTTTGATGACAATGTCAGCTTCCATGATCAATGCAAAATGCTCATTCGAGGCCATTTTCGCCTTCGGGGACTCGAACACCGATACAGGAGGTTTTTTTGCTGCTTTCCCATCTCAGCCATCTCCTAATGGCATGACCTATTTCAGTAGGCCGACTGGCCGACCTTCTGATGGGAGGCTGTACATCGATTTCCT...

Protein

1 records

Download Protein FASTA
XP_057780355.1
MDQQTPHEKHAIIFRQFLVSWIVLMTMSASMINAKCSFEAIFAFGDSNTDTGGFFAAFPSQPSPNGMTYFSRPTGRPSDGRLYIDFLTQALGLPFLSPYLQSVGSDFRHGVNFATSASTVLQPNTSLFVSGVSPFYLAVQINQMKHFKARVEEFKSQGQTNLPQPDIFGKALYVIYIGQNDFTGFAGSAGAGGVKQVEPQIVSHITSAVKDLYRMGGRTFMVLNLAPVGCFPAYLEHLPHAGSDIDQSGCMASYNNAVKE...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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JBrowse

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