当前解析结果
SmilChr08G004210| 统一新 Gene ID | SmilChr08G004210 |
|---|---|
| 名称 | SmilChr08G004210 |
| 描述 | wall-associated receptor kinase-like 8 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 51490342 - 51497902 / + |
| NCBI Gene ID | LOC130998942 |
|---|---|
| GeneID | 130998942 |
| locus_tag | - |
| NCBI Name | LOC130998942 |
| 原始查询 | SmilChr08G004210 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 8 |
| 产物 | wall-associated receptor kinase-like 8 |
| Arabidopsis | AT1G16260 (AT1G16260)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838195] identity=41.8; qcov=1.02; evalue=5.57e-159; confidence=medium |
| Rice | Os02g0807800 (OsWAK20)- identity=37.6; qcov=0.969; evalue=4.02e-132; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998942 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780363.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780363.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780363.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780363.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780363.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:51490379 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | D10 |
Chr8:51490379 |
A |
AG |
1bp_insertion | CDS_variant | 1 | D10 |
Chr8:51490461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr8:51490463 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | B106,B107,B117,B35,B37,B76,C31,C49,C81,D11 |
Chr8:51490565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,A20 |
Chr8:51490570 |
GAT |
G |
2bp_deletion | frameshift_variant | 48 | A10,A18,A2,A24,A8,B104,B106,B107,B109,B111,B117,B118,B120,B123,B124,B13,B130,B136,B139,B19,B21,B22,B37,B41,B44,B51,B65,B73,B76,B82,B85,B90,B97,C18,C24,C29,C31,C35,C48,C49,C50,C52,C75,C8,C81,C9,D11,D7 |
Chr8:51490573 |
C |
CGG |
2bp_insertion | frameshift_variant | 48 | A10,A18,A2,A24,A8,B104,B106,B107,B109,B111,B117,B118,B120,B123,B124,B13,B130,B136,B139,B19,B21,B22,B37,B41,B44,B51,B65,B73,B76,B82,B85,B90,B97,C18,C24,C29,C31,C35,C48,C49,C50,C52,C75,C8,C81,C9,D11,D7 |
Chr8:51490713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr8:51490742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:51490789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:51490844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,B34 |
Chr8:51490861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780363.1PF13947
GUB_WAK_bind 29-91 aa
PF07645
EGF_CA 276-310 aa
PF00069
Pkinase 384-652 aa
PF07714
PK_Tyr_Ser-Thr 387-654 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780363.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 29 | 91 | 1.1e-08 | 36.0 | Wall-associated receptor kinase galacturonan-binding |
XP_057780363.1 |
Pfam | PF07645 |
EGF_CA | Domain | 276 | 310 | 1.9e-08 | 35.1 | Calcium-binding EGF domain |
XP_057780363.1 |
Pfam | PF00069 |
Pkinase | Domain | 384 | 652 | 9.2e-50 | 170.2 | Protein kinase domain |
XP_057780363.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 387 | 654 | 4.2e-45 | 154.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。