Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004217`

染色体: Chr08 坐标: 51565554-51568079 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004217`
名称	SmilChr08G004217
描述	uncharacterized SmilChr08G004217
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	51565554 - 51568079 / `+`

ID 对照

NCBI Gene ID	`LOC130998949`
GeneID	`130998949`
locus_tag	`-`
NCBI Name	`LOC130998949`
原始查询	`SmilChr08G004217`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541]; symbol=AT3G29010; hit=AT3G29010; species=arabidopsis; confidence=high
产物	Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541]; symbol=AT3G29010; hit=AT3G29010; species=arabidopsis; confidence=high
Arabidopsis	`AT3G29010` (AT3G29010) Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541] identity=66.8; qcov=0.913; evalue=1.2e-99; confidence=high
Rice	`Os08g0435800` (OsLPLA) - identity=67.8; qcov=0.851; evalue=4.2e-92; confidence=high
GO	GO:0005739 (mitochondrion); GO:0036211 (protein modification process)
KEGG	-
Pfam	PF21948 (LplA-B_cat)
InterPro	-
eggNOG	-
NR	GeneID:130998949

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780373.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057780373.1`
3	Nucleus	细胞核	0.00000	`XP_057780373.1`
4	Chromosome	染色体	0.00000	`XP_057780373.1`
5	Centromere	着丝粒	0.00000	`XP_057780373.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:51565657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B108,B56,B96,D4
`Chr8:51565708`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A18
`Chr8:51565708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:51565746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,D4
`Chr8:51565770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:51565775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:51565784`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr8:51566302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B60,C15
`Chr8:51566311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr8:51566362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:51566391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B16,B60,C15
`Chr8:51566401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780373.1

266 aa

133

266

LplA-B_cat

PF21948 LplA-B_cat 25-207 aa

XP_057780374.1

234 aa

117

234

LplA-B_cat

PF21948 LplA-B_cat 25-164 aa

XP_057780375.1

208 aa

104

208

LplA-B_cat

PF21948 LplA-B_cat 25-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780373.1`	Pfam	`PF21948`	LplA-B_cat	Domain	25	207	1.6e-28	100.7	Lipoyl protein ligase A/B catalytic domain
`XP_057780374.1`	Pfam	`PF21948`	LplA-B_cat	Domain	25	164	1.4e-22	81.3	Lipoyl protein ligase A/B catalytic domain
`XP_057780375.1`	Pfam	`PF21948`	LplA-B_cat	Domain	25	179	3e-28	99.9	Lipoyl protein ligase A/B catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057924390.1
CACGACTTTGAATTGCAGAACCAATTTGGCGCCGGCAATCGGCTGTTCCGACCGCAAAAACCGCCGTTTTCTAGTATTCATGGCGGCATCTCAGGCAAGAAACGCTGGGCTGCCGATAATCAATCTTCTCCGGTTAAAAGGAGTGTCCATTTTGCAGCAATTGCATTTGGAAGAGAGGCTGCTGCGGACTTCGTCTGAAAACTGGTGCATCATCAACGACGGAACAACCCGCCCCACCATCGTCATGGGTGTTTCAGGGA...

XM_057924391.1
CACGACTTTGAATTGCAGAACCAATTTGGCGCCGGCAATCGGCTGTTCCGACCGCAAAAACCGCCGTTTTCTAGTATTCATGGCGGCATCTCAGGCAAGAAACGCTGGGCTGCCGATAATCAATCTTCTCCGGTTAAAAGGAGTGTCCATTTTGCAGCAATTGCATTTGGAAGAGAGGCTGCTGCGGACTTCGTCTGAAAACTGGTGCATCATCAACGACGGAACAACCCGCCCCACCATCGTCATGGGTGTTTCAGGGA...

CDS

3 records

下载 CDS FASTA

LOC130998949
ATGGCGGCATCTCAGGCAAGAAACGCTGGGCTGCCGATAATCAATCTTCTCCGGTTAAAAGGAGTGTCCATTTTGCAGCAATTGCATTTGGAAGAGAGGCTGCTGCGGACTTCGTCTGAAAACTGGTGCATCATCAACGACGGAACAACCCGCCCCACCATCGTCATGGGTGTTTCAGGGAAACCTAAGGAACTTCTTGAAACTGATGCTGTTCTAAGAGATGAAATTCCAGTCATCCGAAGGTTTACAGGAGGTGGTAC...

Protein

3 records

下载 Protein FASTA

XP_057780373.1
MAASQARNAGLPIINLLRLKGVSILQQLHLEERLLRTSSENWCIINDGTTRPTIVMGVSGKPKELLETDAVLRDEIPVIRRFTGGGTVIVDQGTIFVTFICNKDAIPGLQSYPRPIMSWSSLIYKNMFQGIGEFGLRENDYVLGNRKFGGNAQSITKNRWVHHTSFLWDYEVSNMGYLKMPTRVPEYRQARNHVEFICRLKEFMSRSDFINGTTDGVAAYFSLRSPDADDIQNHSSQFEPSSKLLTRQELRDEASIELVG...

XP_057780374.1
MAASQARNAGLPIINLLRLKGVSILQQLHLEERLLRTSSENWCIINDGTTRPTIVMGVSGKPKELLETDAVLRDEIPVIRRFTGGGTVIVDQGTIFVTFICNKDAIPGLQSYPRPIMSWSSLIYKNMFQGIGEFGLRENDYVLGNRKFGGNAQSITKNRNHVEFICRLKEFMSRSDFINGTTDGVAAYFSLRSPDADDIQNHSSQFEPSSKLLTRQELRDEASIELVGTISQAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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