Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004238`

染色体: Chr08 坐标: 51843258-51851330 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004238`
名称	SmilChr08G004238
描述	pectin acetylesterase 8-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	51843258 - 51851330 / `+`

ID 对照

NCBI Gene ID	`LOC130998966`
GeneID	`130998966`
locus_tag	`-`
NCBI Name	`LOC130998966`
原始查询	`SmilChr08G004238`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pectin acetylesterase 8-like
产物	pectin acetylesterase 8-like
Arabidopsis	`AT4G19420` (AT4G19420) Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827683] identity=63.6; qcov=0.975; evalue=0; confidence=high
Rice	`Os02g0702400` - identity=66.6; qcov=0.95; evalue=0; confidence=high
GO	GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization)
KEGG	-
Pfam	PF03283 (PAE)
InterPro	-
eggNOG	-
NR	GeneID:130998966

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057780392.1`
2	Vacuole	液泡	0.80000	`XP_057780395.1`
3	Lysosome	溶酶体	0.40000	`XP_057780391.1`
4	Nucleus	细胞核	0.00000	`XP_057780395.1`
5	Chromosome	染色体	0.00000	`XP_057780395.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:51848864`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D11
`Chr8:51848864`	`TG`	`T`	1bp_deletion	CDS_variant	1	D11
`Chr8:51849195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B117,B37,C80,C81
`Chr8:51849498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:51849527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:51849560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr8:51849719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B115,B37,C38,D2
`Chr8:51849817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr8:51849838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr8:51849885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:51850052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B133,B50,C17,C74
`Chr8:51850084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B115,B37,C38,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780391.1

394 aa

197

394

PAE

PF03283 PAE 25-376 aa

XP_057780392.1

390 aa

195

390

PAE

PF03283 PAE 21-372 aa

XP_057780394.1

390 aa

195

390

PAE

PF03283 PAE 21-372 aa

XP_057780395.1

403 aa

202

403

PAE

PF03283 PAE 25-393 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780391.1`	Pfam	`PF03283`	PAE	Family	25	376	1.8e-162	541.3	Pectinacetylesterase
`XP_057780392.1`	Pfam	`PF03283`	PAE	Family	21	372	1.8e-162	541.4	Pectinacetylesterase
`XP_057780394.1`	Pfam	`PF03283`	PAE	Family	21	372	1.8e-162	541.4	Pectinacetylesterase
`XP_057780395.1`	Pfam	`PF03283`	PAE	Family	25	393	1.9e-174	580.8	Pectinacetylesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057924409.1
CGCCACCTCCCTTCCCTCTCTGCAAATTTCCAATCCGCCGCGCCTCCAAATTTCAGCGTGTCTCCCACCCTCTGCAACTTCTCTTTCTCATCTTACCTGTAAAATCTACTCATTCTCATTAACCGCATATCTTCTTCAAGCAGCACCTCTTCACTCAAAACACTCAAGCCTCCGCCAATTCATCTGAAAAATGAATGGGAGATTGCATCAATGGGTGTTGATTCTGGTTTCTTTGATGATTTTGCTGAGAAGTGAAAGCT...

XM_057924411.1
GTTTCTTCTTAAATCCATTTTTTTGGGGTTCAAATTTTCGATAGTCGACATCTGGAAGAAGTAACCTTCGTTTAATCGTTTTCCTCTGCTTGATTCCAGCTCTGAATATCCTGAACTGGGATTTAGTTAGTTGTTTCAGCCAACAACCATTAAAAATGAATGGGAGATTGCATCAATGGGTGTTGATTCTGGTTTCTTTGATGATTTTGCTGAGAAGTGAAAGCTTCTTTGTTGATATCACTTATGTTGAGAGCGTTGTG...

CDS

4 records

下载 CDS FASTA

LOC130998966
ATGGGCAGAAAAATGAATGGGAGATTGCATCAATGGGTGTTGATTCTGGTTTCTTTGATGATTTTGCTGAGAAGTGAAAGCTTCTTTGTTGATATCACTTATGTTGAGAGCGTTGTGGCTAAAGGAGCAGTTTGTTTGGATGGGAGTCCACCTGCATACCATTTTGACAATGGTTTTGGAGCAGGAATCAACAATTGGTTGGTTCACATCGAGGGAGGAGGGTGGTGCAACAATGAAACGACGTGCCTAGCCCGAAAAAG...

Protein

4 records

下载 Protein FASTA

XP_057780391.1
MGRKMNGRLHQWVLILVSLMILLRSESFFVDITYVESVVAKGAVCLDGSPPAYHFDNGFGAGINNWLVHIEGGGWCNNETTCLARKSTRLGSSKQMAKQVAFSGIFSNKPQFNPDFYNWNRIKVRYCDGASFTGDVEAVNPDTGLYYRGARVFVAIVEDLLAKGMSHAQNAILSGCSAGGLTSILHCDRFRSLVPATTKVKCFADAGFFINTEDVSGAQHIEQFYNDVVTTHGSAKNLPQSCTSKMKPGLCFFPQNMVQG...

XP_057780392.1
MNGRLHQWVLILVSLMILLRSESFFVDITYVESVVAKGAVCLDGSPPAYHFDNGFGAGINNWLVHIEGGGWCNNETTCLARKSTRLGSSKQMAKQVAFSGIFSNKPQFNPDFYNWNRIKVRYCDGASFTGDVEAVNPDTGLYYRGARVFVAIVEDLLAKGMSHAQNAILSGCSAGGLTSILHCDRFRSLVPATTKVKCFADAGFFINTEDVSGAQHIEQFYNDVVTTHGSAKNLPQSCTSKMKPGLCFFPQNMVQGIQTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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