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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004245

染色体: Chr08 坐标: 51904307-51906864 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004245
名称SmilChr08G004245
描述pentatricopeptide repeat-containing protein At3g61520, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向51904307 - 51906864 / +

ID 对照

NCBI Gene IDLOC130998973
GeneID130998973
locus_tag-
NCBI NameLOC130998973
原始查询SmilChr08G004245

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g61520, mitochondrial
产物pentatricopeptide repeat-containing protein At3g61520%2C mitochondrial
ArabidopsisAT3G61520 (AT3G61520)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825325]
identity=42.7; qcov=0.997; evalue=0; confidence=medium
RiceOs06g0249500
-
identity=48.6; qcov=0.569; evalue=5.92e-141; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130998973

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780405.1
2 Nucleus 细胞核 0.00000 XP_057780405.1
3 Chromosome 染色体 0.00000 XP_057780405.1
4 Centromere 着丝粒 0.00000 XP_057780405.1
5 Chromatin 染色质 0.00000 XP_057780405.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:51904483 G A EMS_canonical_SNV CDS_variant 5 B110,B3,B5,C5,C56
Chr8:51904698 C T EMS_canonical_SNV CDS_variant 2 B103,B49
Chr8:51904772 TGC T 2bp_deletion frameshift_variant 1 B38
Chr8:51904772 TGC T 2bp_deletion CDS_variant 1 B38
Chr8:51904775 G A EMS_canonical_SNV CDS_variant 1 B69
Chr8:51904790 C T EMS_canonical_SNV CDS_variant 3 B12,B78,C67
Chr8:51904827 G A EMS_canonical_SNV CDS_variant 2 B40,C84
Chr8:51904847 C T EMS_canonical_SNV CDS_variant 4 A11,B36,C47,C85
Chr8:51904857 G A EMS_canonical_SNV CDS_variant 3 A11,B36,C47
Chr8:51904858 G A EMS_canonical_SNV CDS_variant 3 A11,B36,C47
Chr8:51904864 C T EMS_canonical_SNV CDS_variant 3 A11,B36,C47
Chr8:51905035 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780405.1
742 aa
N
1
371
742
PPR
PPR
PPR_3
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
TPR_24
PPR
PPR_3
PPR
C
PF01535 PPR 141-161 aa PF01535 PPR 173-197 aa PF13812 PPR_3 272-327 aa PF13041 PPR_2 283-330 aa PF12854 PPR_1 312-345 aa PF01535 PPR 319-346 aa PF13812 PPR_3 348-400 aa PF12854 PPR_1 350-382 aa PF13041 PPR_2 353-395 aa PF01535 PPR 356-379 aa PF12854 PPR_1 388-419 aa PF13041 PPR_2 390-419 aa PF01535 PPR 394-419 aa PF12854 PPR_1 426-454 aa PF13041 PPR_2 426-474 aa PF01535 PPR 428-456 aa PF23276 TPR_24 455-538 aa PF13812 PPR_3 456-505 aa PF12854 PPR_1 457-490 aa PF13041 PPR_2 462-509 aa PF01535 PPR 464-494 aa PF12854 PPR_1 492-520 aa PF13041 PPR_2 496-545 aa PF01535 PPR 500-529 aa PF23276 TPR_24 510-629 aa PF13812 PPR_3 520-579 aa PF13041 PPR_2 532-575 aa PF01535 PPR 536-563 aa PF17177 PPR_long 547-631 aa PF13812 PPR_3 555-612 aa PF12854 PPR_1 563-595 aa PF13041 PPR_2 566-614 aa PF01535 PPR 569-599 aa PF13812 PPR_3 589-647 aa PF12854 PPR_1 597-630 aa PF13041 PPR_2 601-638 aa PF01535 PPR 604-631 aa PF17177 PPR_long 619-736 aa PF12854 PPR_1 635-666 aa PF13041 PPR_2 637-684 aa PF23276 TPR_24 638-736 aa PF01535 PPR 640-670 aa PF13812 PPR_3 660-709 aa PF01535 PPR 676-704 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780405.1 Pfam PF01535 PPR Repeat 141 161 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF01535 PPR Repeat 173 197 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 272 327 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 283 330 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 312 345 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF01535 PPR Repeat 319 346 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 348 400 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 350 382 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 353 395 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 356 379 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 388 419 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 390 419 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 394 419 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 426 454 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 426 474 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 428 456 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF23276 TPR_24 Repeat 455 538 2e-34 119.1 Pentatricopeptide repeat-containing protein
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 456 505 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 457 490 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 462 509 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 464 494 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 492 520 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 496 545 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 500 529 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF23276 TPR_24 Repeat 510 629 2e-34 119.1 Pentatricopeptide repeat-containing protein
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 520 579 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 532 575 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 536 563 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF17177 PPR_long Repeat 547 631 4.7e-32 111.8 Pentacotripeptide-repeat region of PRORP
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 555 612 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 563 595 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 566 614 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 569 599 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 589 647 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 597 630 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 601 638 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF01535 PPR Repeat 604 631 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF17177 PPR_long Repeat 619 736 4.7e-32 111.8 Pentacotripeptide-repeat region of PRORP
XP_057780405.1 Pfam PF12854 PPR_1 Repeat 635 666 4.1e-119 388.7 PPR repeat
XP_057780405.1 Pfam PF13041 PPR_2 Repeat 637 684 4.2e-118 386.1 PPR repeat family
XP_057780405.1 Pfam PF23276 TPR_24 Repeat 638 736 2e-34 119.1 Pentatricopeptide repeat-containing protein
XP_057780405.1 Pfam PF01535 PPR Repeat 640 670 1.9e-92 298.0 PPR repeat
XP_057780405.1 Pfam PF13812 PPR_3 Repeat 660 709 3e-64 213.7 Pentatricopeptide repeat domain
XP_057780405.1 Pfam PF01535 PPR Repeat 676 704 1.9e-92 298.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924422.1
GTATTTTTCATCTTTAAATAGTACTCATGCTACTTTTCCACGATAATATTACCCACTGTTCACCTTATTTTGCCTATTTCACAAAATTAAGAGTGTATTAAATTTATTTCCACTCTGTTCCTCCGTTCATAGCCATGATGAGGCTTTCCCTAAAACCTCCGGCAGCCGCCGCCGCTGCCGCCACTCTCCGTCGCTTCTCCGCCGATCCCCACTCCACGCCACCAGACCCGTCCTGCCACATCTCGGAGACGCTCTCCCTC...

CDS

1 records

下载 CDS FASTA
LOC130998973
ATGATGAGGCTTTCCCTAAAACCTCCGGCAGCCGCCGCCGCTGCCGCCACTCTCCGTCGCTTCTCCGCCGATCCCCACTCCACGCCACCAGACCCGTCCTGCCACATCTCGGAGACGCTCTCCCTCCTACAAACCTCCGATCCCATTTCCTGGCCAGCCAATCCTAAGCTCGCCGATCTCCTATCCGCCGTCTCTCCGCCGTCCGTCCTAAAAATCACCCGCCAGCTCCCGGATTCCCGAAGTGCCCTCAATTTTTTCGA...

Protein

1 records

下载 Protein FASTA
XP_057780405.1
MMRLSLKPPAAAAAAATLRRFSADPHSTPPDPSCHISETLSLLQTSDPISWPANPKLADLLSAVSPPSVLKITRQLPDSRSALNFFEYLKASPHLSDSAPLAFQAVLELAMRENPNSPGKLYELFAMSKEQNTPLSVNAGTLLIKCFSRANMLEEMFTVFGSIDGQVRNTYVVNFVVSGLFKLGRFDDALKLVDEMLQPDACNPPNGYTLSIVFSSILGRNCVGSSVTDEEIYDIFSRFGERGLCLSGFRLTRLISRLCR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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