当前解析结果
SmilChr08G004272| 统一新 Gene ID | SmilChr08G004272 |
|---|---|
| 名称 | SmilChr08G004272 |
| 描述 | uncharacterized SmilChr08G004272 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 52213578 - 52216745 / - |
| NCBI Gene ID | LOC130999001 |
|---|---|
| GeneID | 130999001 |
| locus_tag | - |
| NCBI Name | LOC130999001 |
| 原始查询 | SmilChr08G004272 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835601]; symbol=AT5G55100; hit=AT5G55100; species=arabidopsis; confidence=low |
| 产物 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835601]; symbol=AT5G55100; hit=AT5G55100; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G55100 (AT5G55100)SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835601] identity=37.2; qcov=0.978; evalue=1.25e-19; confidence=low |
| Rice | Os01g0698100 (OJ1116_H09.32-2)- identity=31.6; qcov=0.727; evalue=2.85e-09; confidence=low |
| GO | GO:0000395 (mRNA 5'-splice site recognition) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999001 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780447.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057780447.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057780447.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057780447.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057780447.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:52213871 |
T |
TTA |
2bp_insertion | frameshift_variant | 4 | B113,B134,C25,C79 |
Chr8:52213871 |
T |
TTA |
2bp_insertion | CDS_variant | 4 | B113,B134,C25,C79 |
Chr8:52214190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B138,C54,D1 |
Chr8:52214199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr8:52214306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。