当前解析结果
SmilChr08G004273| 统一新 Gene ID | SmilChr08G004273 |
|---|---|
| 名称 | SmilChr08G004273 |
| 描述 | uncharacterized SmilChr08G004273 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 52236616 - 52238820 / + |
| NCBI Gene ID | LOC130998653 |
|---|---|
| GeneID | 130998653 |
| locus_tag | - |
| NCBI Name | LOC130998653 |
| 原始查询 | SmilChr08G004273 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=28.6; qcov=0.124; evalue=5.39e-06; confidence=weak |
| Rice | Os04g0191000- identity=23; qcov=0.793; evalue=1e-17; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998653 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057780050.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057780050.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057780050.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780050.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780050.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:52236624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B18,C38,D7 |
Chr8:52236639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B117,D7 |
Chr8:52236665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B3,B72,C28,C33 |
Chr8:52236674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,C85,C87 |
Chr8:52236699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B32,B58,B82 |
Chr8:52236705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B94,C74 |
Chr8:52236732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:52236756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B54,C41,C6,C79 |
Chr8:52236768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr8:52236770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:52236772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B48,C85 |
Chr8:52236785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780050.1PF17919
RT_RNaseH_2 15-113 aa
PF17917
RT_RNaseH 46-142 aa
PF13456
RVT_3 178-296 aa
PF17921
Integrase_H2C2 386-434 aa
PF00665
rve 452-549 aa
PF31073
DUF8803 673-733 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780050.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 15 | 113 | 4.8e-18 | 65.8 | RNase H-like domain found in reverse transcriptase |
XP_057780050.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 46 | 142 | 6.9e-15 | 55.8 | RNase H-like domain found in reverse transcriptase |
XP_057780050.1 |
Pfam | PF13456 |
RVT_3 | Domain | 178 | 296 | 7.5e-15 | 55.7 | Reverse transcriptase-like |
XP_057780050.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 386 | 434 | 3.4e-09 | 37.4 | Integrase zinc binding domain |
XP_057780050.1 |
Pfam | PF00665 |
rve | Domain | 452 | 549 | 2.8e-16 | 60.3 | Integrase core domain |
XP_057780050.1 |
Pfam | PF31073 |
DUF8803 | Domain | 673 | 733 | 5.8e-24 | 84.4 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。