Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004292`

染色体: Chr08 坐标: 52592973-52596373 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004292`
名称	SmilChr08G004292
描述	protein REVEILLE 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	52592973 - 52596373 / `+`

ID 对照

NCBI Gene ID	`LOC130999021`
GeneID	`130999021`
locus_tag	`-`
NCBI Name	`LOC130999021`
原始查询	`SmilChr08G004292`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein REVEILLE 3-like
产物	protein REVEILLE 3-like
Arabidopsis	`AT1G01520` (ASG4) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839337] identity=52.9; qcov=0.813; evalue=2.34e-57; confidence=high
Rice	`Os02g0680700` - identity=57.6; qcov=0.733; evalue=2.27e-59; confidence=high
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF24904 (RVE6)
InterPro	-
eggNOG	-
NR	GeneID:130999021

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780473.1`
2	Chromosome	染色体	0.00000	`XP_057780473.1`
3	Centromere	着丝粒	0.00000	`XP_057780473.1`
4	Chromatin	染色质	0.00000	`XP_057780473.1`
5	Telomere	端粒	0.00000	`XP_057780473.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:52593268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr8:52593327`	`GCC`	`G`	2bp_deletion	frameshift_variant	109	A10,A14,A18,A19,A24,A25,A4,A6,B105,B109,B110,B111,B114,B117,B118,B119,B120,B123,B124,B127,B130,B131,B132,B133,B135,B137,B138,B14,B15,B16,B21,B32,B34,B35,B36,B37,B38,B39,B40,B45,B50,B51,B59,B60,B61,B64,B66,B69,B70,B72,B73,B74,B75,B76,B77,B78,B80,B81,B82,B85,B87,B88,B89,B9,B95,B99,C1,C11,C13,C14,C17,C19,C20,C22,C24,C26,C29,C34,C40,C41,C42,C44,C47,C49,C5,C52,C53,C54,C58,C59,C6,C64,C66,C68,C70,C71,C72,C76,C78,C79,C81,C83,C86,C87,C9,D10,D11,D8,D9
`Chr8:52593330`	`GC`	`G`	1bp_deletion	frameshift_variant	108	A10,A14,A18,A19,A24,A25,A4,A6,B105,B109,B110,B111,B114,B117,B118,B119,B120,B123,B124,B127,B130,B131,B132,B133,B135,B137,B138,B14,B15,B16,B21,B32,B34,B35,B36,B37,B38,B39,B40,B45,B50,B59,B60,B61,B64,B66,B69,B70,B72,B73,B74,B75,B76,B77,B78,B80,B81,B82,B85,B87,B88,B89,B9,B95,B99,C1,C11,C13,C14,C17,C19,C20,C22,C24,C26,C29,C34,C39,C40,C41,C42,C44,C47,C5,C52,C53,C54,C58,C59,C6,C64,C66,C68,C70,C71,C72,C76,C78,C79,C81,C83,C86,C87,C9,D10,D11,D8,D9
`Chr8:52593346`	`GA`	`G`	1bp_deletion	frameshift_variant	119	A10,A14,A18,A19,A20,A21,A24,A25,A4,A6,B104,B105,B109,B110,B111,B114,B117,B118,B119,B120,B122,B123,B124,B127,B130,B131,B132,B133,B135,B137,B138,B14,B15,B16,B21,B28,B32,B34,B35,B36,B37,B38,B39,B40,B45,B50,B59,B60,B61,B64,B66,B67,B69,B70,B72,B73,B74,B75,B76,B77,B78,B79,B80,B81,B82,B84,B85,B87,B88,B89,B9,B95,B99,C1,C11,C13,C14,C15,C17,C19,C20,C22,C24,C25,C26,C29,C32,C34,C40,C41,C42,C44,C47,C49,C5,C52,C53,C54,C58,C59,C6,C64,C66,C68,C70,C71,C72,C76,C78,C79,C81,C83,C86,C87,C9,D10,D11,D8,D9
`Chr8:52593349`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C86
`Chr8:52593349`	`AG`	`A`	1bp_deletion	CDS_variant	1	C86
`Chr8:52593359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B87,C25,C79
`Chr8:52593370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,C6
`Chr8:52593382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B59,B70
`Chr8:52593394`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B107,C15
`Chr8:52593394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C15
`Chr8:52593427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B40,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780473.1

298 aa

149

298

Myb_DNA-binding

RVE6

PF00249 Myb_DNA-binding 62-106 aa PF24904 RVE6 238-298 aa

XP_057780474.1

297 aa

148

297

Myb_DNA-binding

RVE6

PF00249 Myb_DNA-binding 62-106 aa PF24904 RVE6 237-297 aa

XP_057780475.1

251 aa

126

251

Myb_DNA-binding

PF00249 Myb_DNA-binding 62-106 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780473.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	62	106	2.5e-11	44.2	Myb-like DNA-binding domain
`XP_057780473.1`	Pfam	`PF24904`	RVE6	Domain	238	298	2.8e-32	111.4	REVEILLE 6-like domain
`XP_057780474.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	62	106	2.5e-11	44.2	Myb-like DNA-binding domain
`XP_057780474.1`	Pfam	`PF24904`	RVE6	Domain	237	297	2.8e-32	111.4	REVEILLE 6-like domain
`XP_057780475.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	62	106	1.8e-11	44.6	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009093375.1
CAACACTCCAATTTCATGGTATTTCACAACAGAAATCAACCAGATAATTAAACACGAAGATTTCCACAAATTTCACCAAAAATAGAAAAGAAAAAGAAAATCAAGCAAACCGGCAATCAAAATTTCAAATTTCAAACTGCTGAACTCATTTGTGTATACGGATTCTATCCAACTTCTTCTCTTTTTTTTTATAGCTTTGAGTCGTTGAGCTTCTACAGTCGATCATATATGGTTTCGGTGCACCCGAATCCCCATCCGGG...

XR_009093376.1
CAACACTCCAATTTCATGGTATTTCACAACAGAAATCAACCAGATAATTAAACACGAAGATTTCCACAAATTTCACCAAAAATAGAAAAGAAAAAGAAAATCAAGCAAACCGGCAATCAAAATTTCAAATTTCAAACTGCTGAACTCATTTGTGTATACGGATTCTATCCAACTTCTTCTCTTTTTTTTTATAGCTTTGAGTCGTTGAGCTTCTACAGTCGATCATATATGGTTTCGGTGCACCCGAATCCCCATCCGGG...

CDS

3 records

下载 CDS FASTA

LOC130999021
ATGGTTTCGGTGCACCCGAATCCCCATCCGGGTCAGGGTTTTACCCATTTATACAATTTCCACTTGGGCGGGGATCCGATGAAGGCAGCAGAGAACAACACGGCGTCGTACTGGAGCGCCGCCGCCGCCGCCGTGGATGAACCCGGAAAGAAGGTCCGCAAGCCTTACACGATCACCAAGTCGAGAGAGAACTGGACTGAGATGGAGCACGAGAAGTTTCTAGAAGCTCTTCATTTATTTGATCGTGACTGGAAGAAAAT...

Protein

3 records

下载 Protein FASTA

XP_057780473.1
MVSVHPNPHPGQGFTHLYNFHLGGDPMKAAENNTASYWSAAAAAVDEPGKKVRKPYTITKSRENWTEMEHEKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKHFMKVQKNGTSEHVPPPRPKRKAAHPYPHKAPKKVASQTSEPLSSAALLDSKYAVGPQSVSVPRNIISSKSLYHWTPTVPTGCASPMSSDDFALSGGDMNWSSNSDDIALHRWTSNETNSQVKEKVIRKRAALPDFAQVYRFIGRLFDPSARCHL...

XP_057780474.1
MVSVHPNPHPGQGFTHLYNFHLGGDPMKAAENNTASYWSAAAAAVDEPGKKVRKPYTITKSRENWTEMEHEKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKHFMKVQKNGTSEHVPPPRPKRKAAHPYPHKAPKKVASQTSEPLSSAALLDSKYAVGPQSVSVPRNIISSKSLYHWTPTVPTGCASPMSSDDFALSGGDMNWSSNSDDIALHRWTSNETNSQVKEKVIRKRALPDFAQVYRFIGRLFDPSARCHLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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