Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004294`

染色体: Chr08 坐标: 52621482-52626018 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004294`
名称	SmilChr08G004294
描述	uncharacterized SmilChr08G004294
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	52621482 - 52626018 / `-`

ID 对照

NCBI Gene ID	`LOC130999024`
GeneID	`130999024`
locus_tag	`-`
NCBI Name	`LOC130999024`
原始查询	`SmilChr08G004294`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium
产物	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G05270` (AT1G05270) TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=37.9; qcov=0.996; evalue=1.13e-49; confidence=medium
Rice	`Os05g0499500` - identity=35.7; qcov=1.01; evalue=4.17e-47; confidence=medium
GO	-
KEGG	-
Pfam	PF01963 (TraB_PrgY_gumN)
InterPro	-
eggNOG	-
NR	GeneID:130999024

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780479.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057780479.1`
3	Mitochondrion inner membrane	线粒体内膜	0.60000	`XP_057780479.1`
4	Chloroplast	叶绿体	0.20000	`XP_057780477.1`
5	Chloroplast membrane	叶绿体膜	0.20000	`XP_057780477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:52621739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:52621788`	`C`	`CT`	1bp_insertion	frameshift_variant	109	A15,A18,A2,A20,A3,A5,A8,B100,B102,B104,B108,B109,B11,B111,B113,B117,B118,B12,B122,B124,B13,B130,B131,B134,B136,B138,B140,B18,B19,B26,B3,B32,B33,B36,B41,B44,B45,B47,B52,B54,B55,B56,B57,B59,B6,B61,B62,B65,B67,B7,B71,B72,B73,B8,B82,B85,B87,B9,B90,B92,B94,B96,B98,B99,C12,C17,C20,C23,C24,C25,C26,C30,C34,C35,C37,C38,C4,C42,C43,C44,C45,C46,C47,C48,C49,C5,C56,C6,C62,C65,C7,C70,C71,C72,C75,C77,C78,C8,C81,C82,C86,C87,D10,D11,D2,D3,D4,D7,D9
`Chr8:52621803`	`T`	`TA`	1bp_insertion	frameshift_variant	1	C43
`Chr8:52621803`	`T`	`TA`	1bp_insertion	CDS_variant	1	C43
`Chr8:52621818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B13,C77
`Chr8:52622047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:52622248`	`A`	`ACG`	2bp_insertion	frameshift_variant	4	B65,C20,C6,D2
`Chr8:52622248`	`A`	`ACG`	2bp_insertion	CDS_variant	4	B65,C20,C6,D2
`Chr8:52622309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,D10
`Chr8:52622860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B52,B72,C72,C86
`Chr8:52622867`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B104
`Chr8:52622867`	`AT`	`A`	1bp_deletion	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780477.1

331 aa

166

331

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 224-290 aa

XP_057780478.1

296 aa

148

296

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 189-255 aa

XP_057780479.1

283 aa

142

283

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 176-242 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780477.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	224	290	1.9e-14	54.8	TraB/PrgY/gumN family
`XP_057780478.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	189	255	1.4e-14	55.3	TraB/PrgY/gumN family
`XP_057780479.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	176	242	1.8e-12	48.4	TraB/PrgY/gumN family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057924496.1
GTGTCTAAACATCACTCCGAAATTTTGCACTTCTCGTTATAAAATATGGCCAACGTCTCACTCCAAAATTTCACCCAAAATCGGAAGTAGCCAAAAGATGTACGGATTAAACCGTCTCAATTCGGCCAATCACATCTCCGCCGCCGCCGCCGTATATCCGAAACGGTTGCTCAGAACAAGTATCGGTCACTCCTCTCCCGCAGCGACAGCTGGAATTAGTGACACCCGCAATTGTTATGTGAGAAAACGGGGGAAAAAGC...

XM_057924495.1
TGTCTAAACATCACTCCGAAATTTTGCACTTCTCGTTATAAAATATGGCCAACGTCTCACTCCAAAATTTCACCCAAAATCGGAAGTAGCCAAAAGATGTACGGATTAAACCGTCTCAATTCGGCCAATCACATCTCCGCCGCCGCCGCCGTATATCCGAAACGGTTGCTCAGAACAAGTATCGGTCACTCCTCTCCCGCAGCGACAGCTGGAATTAGTGACACCCGCAATTGTTATGTGAGAAAACGGGGGAAAAAGCT...

CDS

3 records

下载 CDS FASTA

LOC130999024
ATGTACGGATTAAACCGTCTCAATTCGGCCAATCACATCTCCGCCGCCGCCGCCGTATATCCGAAACGGTTGCTCAGAACAAGTATCGGTCACTCCTCTCCCGCAGCGACAGCTGGAATTAGTGACACCCGCAATTGTTATGTGAGAAAACGGGGGAAAAAGCTGAAGGAGCTCTCGAGGAGTGTGGTGATGCTCACTTGCGATTCATCTGCAGATGGCGGCGTCTGCAATGTTTATTTGGTCGGATCCAATCACGCTTC...

Protein

3 records

下载 Protein FASTA

XP_057780477.1
MYGLNRLNSANHISAAAAVYPKRLLRTSIGHSSPAATAGISDTRNCYVRKRGKKLKELSRSVVMLTCDSSADGGVCNVYLVGSNHASPKSWEEVRATVRFLKPEVVFLEFCSIREHILRREKIKVPTIMEMVEMWKKNNKLSWILYKWCFAKRVSRFEVPHDGDFLAAYDEAKKYGAKVILGDRPQDITDRRYIAKTSICQFLTVQIEGIPMNLPNDIVEKVTYGKYDAHAVHRYNQEMAKSDPAWAEIYIHERDLYLSA...

XP_057780478.1
MYGLNRLNSANHISAAAAVYPKRLLRTSIGHSSPAATAGISDTRNCYVRKRGKKLKELSRSVVMLTCDSSADGGVCNVYLVGSNHASPKSWEEVRATVRFLKPEVVFLEFCSIREHILRREKIKVPTIMEMVEMWKKNNKLSWILYKWCFAKITDRRYIAKTSICQFLTVQIEGIPMNLPNDIVEKVTYGKYDAHAVHRYNQEMAKSDPAWAEIYIHERDLYLSAKILDVARKHKSVVAVVGKGHVPGIQKNWKQPVDVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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