Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004320`

染色体: Chr08 坐标: 52898623-52902182 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004320`
名称	SmilChr08G004320
描述	mitogen-activated protein kinase homolog MMK2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	52898623 - 52902182 / `-`

ID 对照

NCBI Gene ID	`LOC130999042`
GeneID	`130999042`
locus_tag	`-`
NCBI Name	`LOC130999042`
原始查询	`SmilChr08G004320`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitogen-activated protein kinase homolog MMK2-like
产物	mitogen-activated protein kinase homolog MMK2-like
Arabidopsis	`AT4G01370` (MPK4) MAP kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:828151] identity=86.7; qcov=1; evalue=0; confidence=high
Rice	`Os08g0157000` (OsMAPK2) - identity=84.5; qcov=0.963; evalue=0; confidence=high
GO	GO:0004707 (MAP kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130999042

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780493.1`
2	Cytoplasm	细胞质	1.00000	`XP_057780493.1`
3	Chromosome	染色体	0.00000	`XP_057780493.1`
4	Centromere	着丝粒	0.00000	`XP_057780493.1`
5	Chromatin	染色质	0.00000	`XP_057780493.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:52898997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C85
`Chr8:52899195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C85
`Chr8:52899282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:52899486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:52899543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B20,C26,C30
`Chr8:52899686`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr8:52899693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:52901709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780493.1

399 aa

200

399

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 44-321 aa PF07714 PK_Tyr_Ser-Thr 48-240 aa PF06293 Kdo 79-181 aa

XP_057780494.1

376 aa

188

376

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 44-329 aa PF07714 PK_Tyr_Ser-Thr 48-240 aa PF06293 Kdo 79-181 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780493.1`	Pfam	`PF00069`	Pkinase	Domain	44	321	4.4e-67	227.0	Protein kinase domain
`XP_057780493.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	48	240	2.9e-33	116.0	Protein tyrosine and serine/threonine kinase
`XP_057780493.1`	Pfam	`PF06293`	Kdo	Family	79	181	2.6e-05	24.5	Lipopolysaccharide kinase (Kdo/WaaP) family
`XP_057780494.1`	Pfam	`PF00069`	Pkinase	Domain	44	329	2.3e-70	237.7	Protein kinase domain
`XP_057780494.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	48	240	2.2e-33	116.4	Protein tyrosine and serine/threonine kinase
`XP_057780494.1`	Pfam	`PF06293`	Kdo	Family	79	181	2.3e-05	24.7	Lipopolysaccharide kinase (Kdo/WaaP) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924510.1
GAGTTGTTAGAAATTAAGAATAGTAAATAGTAGAAGGAGATTTAATTTAAGGAAGAAAGAAAAAAAGTTGAGAGAAAAAGAGGAAGAAAGGTTTGTAACCAGGTGTATGGTTAAAGATGGATTCAAAAGCAAGCTCCTCATAAAAGTCAATTTTCTTCACGGGTAATCTCGAGTCATTCCAGTTCAAAAGTTCACACGCAAACCAAACCAAACCCTCTCTCTCCTCTCTAGAAATTTGGCAAAAAAGCATACAAAGTTAA...

XM_057924511.1
AGTTGAGAGAAAAAGAGGAAGAAAGGTTTGTAACCAGGTGTATGGTTAAAGATGGATTCAAAAGCAAGCTCCTCATAAAAGTCAATTTTCTTCACGGGTAATCTCGAGTCATTCCAGTTCAAAAGTTCACACGCAAACCAAACCAAACCCTCTCTCTCCTCTCTAGAAATTTGGCAAAAAAGCATACAAAGTTAATATTCACCACCCTTGTAATAGAAAAGCAGACGGCAGAATTAAATGTGGCAGAGCTCACATTTGGG...

CDS

2 records

下载 CDS FASTA

LOC130999042
ATGTCTGTGGAGTCGAGCTCCGGTTCAGGCGATCATGGCGGGCACAACATCAAAGGCGTGGCGACTCACGGCGGAAGATACGTGCAGTACAATGTGTACGGAAATCTCTTCGAGGTTTCCAGAAAGTATGTTCCTCTCAGGCCTGTCGGCCGTGGAGCTTATGGCATTGTCTGCGCGGCTGTGAACTCCGAGACACGTGAAGAAGTCGCCATTAAGAAGATCGGCAACGCATTCGACAACAGGATTGATGCAAAGAGGAC...

Protein

2 records

下载 Protein FASTA

XP_057780493.1
MSVESSSGSGDHGGHNIKGVATHGGRYVQYNVYGNLFEVSRKYVPLRPVGRGAYGIVCAAVNSETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMNHDNVVAIKDIIRPPQKENFNDVYIVYELMDTDLHQIIQSNQTLTDDHCRYFLYQILRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRKPLFPGKDYVHQLRLITELI...

XP_057780494.1
MSVESSSGSGDHGGHNIKGVATHGGRYVQYNVYGNLFEVSRKYVPLRPVGRGAYGIVCAAVNSETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMNHDNVVAIKDIIRPPQKENFNDVYIVYELMDTDLHQIIQSNQTLTDDHCRYFLYQILRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRKPLFPGKDYVHQLRLITELI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器