Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004325`

染色体: Chr08 坐标: 52948430-52967106 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004325`
名称	SmilChr08G004325
描述	uncharacterized SmilChr08G004325
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	52948430 - 52967106 / `+`

ID 对照

NCBI Gene ID	`LOC130998665`
GeneID	`130998665`
locus_tag	`-`
NCBI Name	`LOC130998665`
原始查询	`SmilChr08G004325`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=weak
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=weak
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=34.5; qcov=0.27; evalue=1.45e-06; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:130998665

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780062.1`
2	Cytoplasm	细胞质	0.40000	`XP_057780062.1`
3	Cytosol	细胞质基质	0.20000	`XP_057780062.1`
4	Chromosome	染色体	0.00000	`XP_057780062.1`
5	Centromere	着丝粒	0.00000	`XP_057780062.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:52948591`	`AGC`	`A`	2bp_deletion	frameshift_variant	24	A10,A2,B11,B125,B130,B138,B140,B24,B28,B44,B64,B65,B81,C14,C21,C28,C36,C39,C44,C48,C62,C70,C81,D10
`Chr8:52948597`	`C`	`CA`	1bp_insertion	frameshift_variant	157	A10,A11,A13,A14,A15,A18,A19,A20,A21,A24,A3,A4,A5,A6,A7,A8,A9,B10,B100,B104,B105,B106,B107,B108,B109,B110,B112,B117,B119,B120,B121,B122,B123,B124,B125,B130,B132,B135,B136,B137,B14,B16,B17,B18,B19,B21,B22,B24,B27,B29,B3,B33,B35,B36,B37,B38,B39,B42,B43,B45,B47,B48,B49,B51,B53,B55,B56,B61,B64,B65,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B78,B79,B82,B83,B84,B86,B87,B88,B89,B9,B93,B96,C1,C10,C11,C14,C15,C16,C17,C20,C22,C23,C24,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C37,C38,C40,C41,C46,C48,C49,C5,C50,C51,C52,C53,C54,C55,C59,C6,C60,C63,C64,C65,C66,C67,C68,C69,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C82,C83,C86,C87,D1,D3,D4,D6,D7,D9
`Chr8:52948599`	`A`	`AAT`	2bp_insertion	frameshift_variant	34	A20,A6,B102,B114,B21,B26,B28,B31,B4,B44,B58,B59,B7,B75,B80,B83,B86,B98,C12,C23,C3,C31,C36,C50,C61,C62,C64,C66,C7,C72,C77,D4,D8,D9
`Chr8:52948631`	`A`	`AAT`	2bp_insertion	frameshift_variant	12	A23,B106,B112,B128,B132,B15,B31,B63,C47,C58,C7,C86
`Chr8:52948634`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:52948636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:52948672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B14,D3
`Chr8:52948811`	`G`	`GAA`	2bp_insertion	frameshift_variant	7	B132,B47,B55,B65,C64,C66,C73
`Chr8:52948812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr8:52948859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:52948860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:52948863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780062.1

407 aa

204

407

FBA_3

Beta-prop_KIB1-4

FBA_1

PF08268 FBA_3 38-231 aa PF03478 Beta-prop_KIB1-4 54-276 aa PF07734 FBA_1 65-223 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780062.1`	Pfam	`PF08268`	FBA_3	Repeat	38	231	2.5e-10	40.6	F-box associated beta propeller domain
`XP_057780062.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	54	276	2e-07	31.5	KIB1-4 beta-propeller
`XP_057780062.1`	Pfam	`PF07734`	FBA_1	Repeat	65	223	5.3e-09	36.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924079.1
AATAACAACAACATTGCTTTTTTTGTTGCCAAGAAATGAAGAAAGAAATAAGCCACCAACATTTGATGTTTGATTGATGCAGATGCAGACACCACAATTTATCTCGTCTCTTTCAAACACGAAAGGAAGTTTATGACGCTTTCTTCCTCTTCTTCTTGGAAAGCCATCAATTTTGGATCGACGATGAAGAATTCCGGCGAGACACGGCTTGTTGTGAAACGCAACCATGGAAAAGGTGGTACGTGTTATTTAAGTGCTCT...

CDS

1 records

下载 CDS FASTA

LOC130998665
ATGACGCTTTCTTCCTCTTCTTCTTGGAAAGCCATCAATTTTGGATCGACGATGAAGAATTCCGGCGAGACACGGCTTGTTGTGAAACGCAACCATGGAAAAGGTGGTACGTGTTATTTAAGTGCTCTTTCTCCCCAAGATTTATCTGAAATCCCTGAATATAGGGTAGACCTTCCTTTTTGGAATCCATGGGATCTGACTGCCAGTCACAGTTGCAGTGGGGGTTTGTTGTCAATGACTAGTTTTGCTGGTCATATCTA...

Protein

1 records

下载 Protein FASTA

XP_057780062.1
MTLSSSSSWKAINFGSTMKNSGETRLVVKRNHGKGGTCYLSALSPQDLSEIPEYRVDLPFWNPWDLTASHSCSGGLLSMTSFAGHIYLCNPTTKQFQILPPKEETPETPDGILSLSETRIVGSCVGYDSESDDYRVLRVWEREHRLGIGQPSGKHRTYDLYSLRDDSWKPIPPPECHCRLPTMTPTIIYARDKFYWPTLDQEVMCYDCREESFYLLPSPPNTRGLHLQLVKFYDEDSVGVVLYRSPKVNPETGLAQPDAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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