当前解析结果
SmilChr08G004330| 统一新 Gene ID | SmilChr08G004330 |
|---|---|
| 名称 | SmilChr08G004330 |
| 描述 | protein pleiotropic regulatory locus 1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 52978948 - 52983828 / + |
| NCBI Gene ID | LOC130999059 |
|---|---|
| GeneID | 130999059 |
| locus_tag | - |
| NCBI Name | LOC130999059 |
| 原始查询 | SmilChr08G004330 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein pleiotropic regulatory locus 1 |
| 产物 | protein pleiotropic regulatory locus 1 |
| Arabidopsis | AT4G15900 (PRL1)pleiotropic regulatory locus 1 [Source:NCBI gene (formerly Entrezgene);Acc:827272] identity=72; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0339100 (OsWD40-70)- identity=71.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0000974 (Prp19 complex); GO:0005515 (protein binding); GO:0071011 (precatalytic spliceosome); GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40); PF23098 (Beta-prop_NOL10_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999059 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780501.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057780501.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780501.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780501.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780501.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:52980403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:52981189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:52981638 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr8:52981638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:52981788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr8:52982186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:52982213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:52982337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr8:52982352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr8:52982481 |
A |
AAT |
2bp_insertion | frameshift_variant | 2 | D10,D11 |
Chr8:52982481 |
A |
AAT |
2bp_insertion | CDS_variant | 2 | D10,D11 |
Chr8:52982496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780501.1PF00400
WD40 160-197 aa
PF00400
WD40 203-239 aa
PF00400
WD40 244-281 aa
PF23098
Beta-prop_NOL10_N 253-400 aa
PF00400
WD40 287-323 aa
PF00400
WD40 327-357 aa
PF00400
WD40 428-455 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780501.1 |
Pfam | PF00400 |
WD40 | Repeat | 160 | 197 | 6.6e-50 | 166.2 | WD domain, G-beta repeat |
XP_057780501.1 |
Pfam | PF00400 |
WD40 | Repeat | 203 | 239 | 6.6e-50 | 166.2 | WD domain, G-beta repeat |
XP_057780501.1 |
Pfam | PF00400 |
WD40 | Repeat | 244 | 281 | 6.6e-50 | 166.2 | WD domain, G-beta repeat |
XP_057780501.1 |
Pfam | PF23098 |
Beta-prop_NOL10_N | Repeat | 253 | 400 | 1.1e-17 | 65.0 | Nucleolar protein 10-like, N-terminal domain |
XP_057780501.1 |
Pfam | PF00400 |
WD40 | Repeat | 287 | 323 | 6.6e-50 | 166.2 | WD domain, G-beta repeat |
XP_057780501.1 |
Pfam | PF00400 |
WD40 | Repeat | 327 | 357 | 6.6e-50 | 166.2 | WD domain, G-beta repeat |
XP_057780501.1 |
Pfam | PF00400 |
WD40 | Repeat | 428 | 455 | 6.6e-50 | 166.2 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。