Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004334`

染色体: Chr08 坐标: 52995227-52998950 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004334`
名称	SmilChr08G004334
描述	serine/threonine-protein kinase VIK-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	52995227 - 52998950 / `-`

ID 对照

NCBI Gene ID	`LOC130999061`
GeneID	`130999061`
locus_tag	`-`
NCBI Name	`LOC130999061`
原始查询	`SmilChr08G004334`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase VIK-like
产物	serine/threonine-protein kinase VIK-like
Arabidopsis	`AT3G58760` (AT3G58760) Integrin-linked protein kinase family [Source:NCBI gene (formerly Entrezgene);Acc:825045] identity=47.4; qcov=1.04; evalue=6e-42; confidence=medium
Rice	`Os07g0632800` - identity=50; qcov=0.947; evalue=3.2e-39; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00023 (Ank); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12796 (Ank_2); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130999061

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057780504.1`
2	Cytosol	细胞质基质	1.00000	`XP_057780504.1`
3	Nucleus	细胞核	0.20000	`XP_057780505.1`
4	Cell membrane	细胞膜	0.20000	`XP_057780505.1`
5	Membrane raft	膜筏	0.20000	`XP_057780506.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:52995503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:52996593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr8:52996975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780504.1

421 aa

210

421

Ank_2

Ank

PK_Tyr_Ser-Thr

Pkinase

PF12796 Ank_2 21-86 aa PF00023 Ank 57-87 aa PF07714 PK_Tyr_Ser-Thr 147-400 aa PF00069 Pkinase 151-397 aa

XP_057780505.1

414 aa

207

414

Ank_2

Ank_5

Ank

Ank_4

Ank

Pkinase

PK_Tyr_Ser-Thr

PF12796 Ank_2 30-118 aa PF13857 Ank_5 45-94 aa PF00023 Ank 57-87 aa PF13637 Ank_4 62-109 aa PF00023 Ank 90-121 aa PF00069 Pkinase 139-390 aa PF07714 PK_Tyr_Ser-Thr 140-393 aa

XP_057780506.1

169 aa

169

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 1-145 aa PF07714 PK_Tyr_Ser-Thr 1-148 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780504.1`	Pfam	`PF12796`	Ank_2	Repeat	21	86	2.3e-08	35.2	Ankyrin repeats (3 copies)
`XP_057780504.1`	Pfam	`PF00023`	Ank	Repeat	57	87	7.4e-09	36.1	Ankyrin repeat
`XP_057780504.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	147	400	2.8e-54	184.9	Protein tyrosine and serine/threonine kinase
`XP_057780504.1`	Pfam	`PF00069`	Pkinase	Domain	151	397	5.1e-51	174.3	Protein kinase domain
`XP_057780505.1`	Pfam	`PF12796`	Ank_2	Repeat	30	118	1.1e-13	52.3	Ankyrin repeats (3 copies)
`XP_057780505.1`	Pfam	`PF13857`	Ank_5	Repeat	45	94	1.5e-06	29.2	Ankyrin repeats (many copies)
`XP_057780505.1`	Pfam	`PF00023`	Ank	Repeat	57	87	2.7e-14	53.2	Ankyrin repeat
`XP_057780505.1`	Pfam	`PF13637`	Ank_4	Repeat	62	109	3e-08	34.4	Ankyrin repeats (many copies)
`XP_057780505.1`	Pfam	`PF00023`	Ank	Repeat	90	121	2.7e-14	53.2	Ankyrin repeat
`XP_057780505.1`	Pfam	`PF00069`	Pkinase	Domain	139	390	1.6e-53	182.5	Protein kinase domain
`XP_057780505.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	140	393	7.3e-56	190.0	Protein tyrosine and serine/threonine kinase
`XP_057780506.1`	Pfam	`PF00069`	Pkinase	Domain	1	145	1.2e-29	104.2	Protein kinase domain
`XP_057780506.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1	148	4.1e-31	108.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057924521.1
AATAACTTTTTAAATTTGAAATTTTAATGAGTAAAATTGGAATATTTGGTAAAATCAAATGTACGCTAATAAAACAAGGCCAATTATAATTTTCAACTAAAAGAAATGAAAAAAATAAAAATCAGCGAATAAGAACTGCCGTGGATCTCTCAAAAAACTGCCGTTGAGAAAACGAGGGAAAATCTGATTGTGTGAAGAAGTAGTGACGCAAATGTTGAGAAACCATCAATGTCTGATAGATTTTTCTGGAGAATCCATGC...

XM_057924522.1
CTTTTTAAATTTGAAATTTTAATGAGTAAAATTGGAATATTTGGTAAAATCAAATGTACGCTAATAAAACAAGGCCAATTATAATTTTCAACTAAAAGAAATGAAAAAAATAAAAATCAGCGAATAAGAACTGCCGTGGATCTCTCAAAAAACTGCCGTTGAGAAAACGAGGGAAAATCTGATTGTGTGAAGAAGTAGTGACGCAAATGTTGAGAAACCATCAATGTCTGATAGATTTTTCTGGAGAATCCATGCATGGA...

CDS

3 records

下载 CDS FASTA

LOC130999061
ATGGAAAATCATAGGCTTGAATCATCTCTTACTAAGCAACTGATGCCATCTCAAAGGAACGAGTGGAGAGGTCCGTATCGCCTTCTGTTTTGTTCGAGTAAGGGTGATAAAGCCGGTGTGATGGAGGAGCTCGCAAAAGGTGTAAGTGCCAACCTGGCCGACTATGATAGGAGAACAGCACTTCATTTGGCATCGTGTGAGGGTTGCACAGAAATAGTTGTTCTCCTTCTTGAGAAAGGAGCTGACGTCAACTCCTTGGA...

Protein

3 records

下载 Protein FASTA

XP_057780504.1
MENHRLESSLTKQLMPSQRNEWRGPYRLLFCSSKGDKAGVMEELAKGVSANLADYDRRTALHLASCEGCTEIVVLLLEKGADVNSLDRWGRTVSANLTFLHHYLMLVDLAIRIFAKFWRQMVELIRICSILKLRVWRLIQLRSTGMEKLLLGAYGEVYLVKWRGTEVAAKTIRSSIASNKTVKDNFLKEFTLWAKLRHPNIVQFLGVLKQPAGRLVFLTEYLRNGSLYDILRRKGKLDSLTAVAYALDIARGMNYLHQHK...

XP_057780505.1
MENHRLESSLTKQLMPSQRNEWRGPYRLLFCSSKGDKAGVMEELAKGVSANLADYDRRTALHLASCEGCTEIVVLLLEKGADVNSLDRWGRTPLSDARRSGHPDICKILEANGGTDPDLLDSQTPCLEIDSAEVDWDGKTLIGEGAYGEVYLVKWRGTEVAAKTIRSSIASNKTVKDNFLKEFTLWAKLRHPNIVQFLGVLKQPAGRLVFLTEYLRNGSLYDILRRKGKLDSLTAVAYALDIARGMNYLHQHKPHAIIHR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器