Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004335`

染色体: Chr08 坐标: 52999585-53002243 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004335`
名称	SmilChr08G004335
描述	F-box/kelch-repeat protein SKIP4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	52999585 - 53002243 / `-`

ID 对照

NCBI Gene ID	`LOC130999062`
GeneID	`130999062`
locus_tag	`-`
NCBI Name	`LOC130999062`
原始查询	`SmilChr08G004335`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein SKIP4
产物	F-box/kelch-repeat protein SKIP4
Arabidopsis	`AT3G61350` (SKIP4) SKP1 interacting partner 4 [Source:NCBI gene (formerly Entrezgene);Acc:825307] identity=51; qcov=0.956; evalue=9.77e-117; confidence=high
Rice	`Os02g0114600` (OsFbox060) - identity=45.4; qcov=0.942; evalue=2.49e-104; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF01344 (Kelch_1); PF25210 (Kelch_FKB95)
InterPro	-
eggNOG	-
NR	GeneID:130999062

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780507.1`
2	Cytosol	细胞质基质	0.40000	`XP_057780507.1`
3	Chromosome	染色体	0.00000	`XP_057780507.1`
4	Centromere	着丝粒	0.00000	`XP_057780507.1`
5	Chromatin	染色质	0.00000	`XP_057780507.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:52999692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,C83
`Chr8:52999833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B108,B124,B61
`Chr8:52999965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,C83
`Chr8:52999986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr8:53000016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:53000034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C49,C83
`Chr8:53001125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:53001239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:53001365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B76,B83,C46,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780507.1

365 aa

182

365

F-box

Kelch_1

Kelch_FKB95

Kelch_1

PF00646 F-box 31-67 aa PF01344 Kelch_1 119-164 aa PF25210 Kelch_FKB95 124-301 aa PF01344 Kelch_1 167-207 aa

XP_057780508.1

365 aa

182

365

F-box

Kelch_1

Kelch_FKB95

Kelch_1

PF00646 F-box 31-67 aa PF01344 Kelch_1 119-164 aa PF25210 Kelch_FKB95 124-301 aa PF01344 Kelch_1 167-207 aa

XP_057780509.1

365 aa

182

365

F-box

Kelch_1

Kelch_FKB95

Kelch_1

PF00646 F-box 31-67 aa PF01344 Kelch_1 119-164 aa PF25210 Kelch_FKB95 124-301 aa PF01344 Kelch_1 167-207 aa

XP_057780510.1

365 aa

182

365

F-box

Kelch_1

Kelch_FKB95

Kelch_1

PF00646 F-box 31-67 aa PF01344 Kelch_1 119-164 aa PF25210 Kelch_FKB95 124-301 aa PF01344 Kelch_1 167-207 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780507.1`	Pfam	`PF00646`	F-box	Domain	31	67	4.6e-06	27.0	F-box domain
`XP_057780507.1`	Pfam	`PF01344`	Kelch_1	Repeat	119	164	9.3e-19	67.3	Kelch motif
`XP_057780507.1`	Pfam	`PF25210`	Kelch_FKB95	Repeat	124	301	6.4e-27	95.6	FKB95, Kelch-repeats domain
`XP_057780507.1`	Pfam	`PF01344`	Kelch_1	Repeat	167	207	9.3e-19	67.3	Kelch motif
`XP_057780508.1`	Pfam	`PF00646`	F-box	Domain	31	67	4.6e-06	27.0	F-box domain
`XP_057780508.1`	Pfam	`PF01344`	Kelch_1	Repeat	119	164	9.3e-19	67.3	Kelch motif
`XP_057780508.1`	Pfam	`PF25210`	Kelch_FKB95	Repeat	124	301	6.4e-27	95.6	FKB95, Kelch-repeats domain
`XP_057780508.1`	Pfam	`PF01344`	Kelch_1	Repeat	167	207	9.3e-19	67.3	Kelch motif
`XP_057780509.1`	Pfam	`PF00646`	F-box	Domain	31	67	4.6e-06	27.0	F-box domain
`XP_057780509.1`	Pfam	`PF01344`	Kelch_1	Repeat	119	164	9.3e-19	67.3	Kelch motif
`XP_057780509.1`	Pfam	`PF25210`	Kelch_FKB95	Repeat	124	301	6.4e-27	95.6	FKB95, Kelch-repeats domain
`XP_057780509.1`	Pfam	`PF01344`	Kelch_1	Repeat	167	207	9.3e-19	67.3	Kelch motif
`XP_057780510.1`	Pfam	`PF00646`	F-box	Domain	31	67	4.6e-06	27.0	F-box domain
`XP_057780510.1`	Pfam	`PF01344`	Kelch_1	Repeat	119	164	9.3e-19	67.3	Kelch motif
`XP_057780510.1`	Pfam	`PF25210`	Kelch_FKB95	Repeat	124	301	6.4e-27	95.6	FKB95, Kelch-repeats domain
`XP_057780510.1`	Pfam	`PF01344`	Kelch_1	Repeat	167	207	9.3e-19	67.3	Kelch motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057924527.1
ATGGTATAATTTTCAACCATATATCTCATTTTTTTTAAAAGAAAATATTGCACCGAAAAATCGATGCAATTGCTGAGTTGCGAGTCCAAAATATGAGGGAGAAATTCAAAATGGAGTCCAGCCCAAAACTCTTGGGATCTTAAAAAAATCTGAAGCCCGCAAAAAATCAAAATAGCAACTCCTCAACGCACGAAACCGTAGTTTCAGCATCATCAATCCATTTGCTTCTTCCGCAATTCTTCGATGATTCGTAATTCTCT...

XM_057924525.1
ATATTGCACCGAAAAATCGATGCAATTGCTGAGTTGCGAGTCCAAAATATGAGGGAGAAATTCAAAATGGAGTCCAGCCCAAAACTCTTGGGATCTTAAAAAAATCTGAAGCCCGCAAAAAATCAAAATAGCAACTCCTCAACGCACGAAACCGTAGTTTCAGCATCATCAATCCATTTGCTTCTTCCGCAATTCTTCGATGATTCGTAATTCTCTGATGAGTTTGGATCGATAATTTCAGAACCCGGTTCCTCAGAAGG...

CDS

4 records

下载 CDS FASTA

LOC130999062
ATGAATTGTGGGGAAAGCTTTTCAAATGTGGATTGCTCAAATATGGAGATAGAGTCCCTTCTTCAATCAGTTGAACCATCATTGATACCTGGAATTCCAGACGACGTTGCACTCTCTTGCTTGGCAAGAGTTCCTCGAAAGTACCATCCAGTTCTCAACTGTGTTTCGAAGAGATGGAGGTATCTGGTTGCAAGTGAAGAGTGGTTTTGGTACAGGCTGAGACACCACCTGGAAGAGACTTGGATTTATTCTCTTTGCAG...

Protein

4 records

下载 Protein FASTA

XP_057780507.1
MNCGESFSNVDCSNMEIESLLQSVEPSLIPGIPDDVALSCLARVPRKYHPVLNCVSKRWRYLVASEEWFWYRLRHHLEETWIYSLCRDKSEQLCIYALDPNQFRRGWRRIHGLPGSFLRRKGVGFEVLGKRIYLFGGCGWIEDATDEVYSYDASMNTWARAAPLSTARCFFAYEALDGKIYAIGGLGSNSSDQHSWDIYDSQTSSWSSHVDPNVIPDIEDSVVMDGKIYIRARISAASSQVNAVVYDPSNRTWQLADADV...

XP_057780508.1
MNCGESFSNVDCSNMEIESLLQSVEPSLIPGIPDDVALSCLARVPRKYHPVLNCVSKRWRYLVASEEWFWYRLRHHLEETWIYSLCRDKSEQLCIYALDPNQFRRGWRRIHGLPGSFLRRKGVGFEVLGKRIYLFGGCGWIEDATDEVYSYDASMNTWARAAPLSTARCFFAYEALDGKIYAIGGLGSNSSDQHSWDIYDSQTSSWSSHVDPNVIPDIEDSVVMDGKIYIRARISAASSQVNAVVYDPSNRTWQLADADV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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