Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004337`

染色体: Chr08 坐标: 53028889-53033403 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004337`
名称	SmilChr08G004337
描述	uncharacterized SmilChr08G004337
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53028889 - 53033403 / `+`

ID 对照

NCBI Gene ID	`LOC130999064`
GeneID	`130999064`
locus_tag	`-`
NCBI Name	`LOC130999064`
原始查询	`SmilChr08G004337`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824066]; symbol=AT3G49050; hit=AT3G49050; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824066]; symbol=AT3G49050; hit=AT3G49050; species=arabidopsis; confidence=high
Arabidopsis	`AT3G49050` (AT3G49050) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824066] identity=69.2; qcov=0.994; evalue=0; confidence=high
Rice	`Os06g0256300` - identity=57.2; qcov=1.01; evalue=6.42e-143; confidence=high
GO	GO:0016042 (lipid catabolic process)
KEGG	-
Pfam	PF01764 (Lipase_3); PF03893 (Lipase3_N)
InterPro	-
eggNOG	-
NR	GeneID:130999064

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057780517.1`
2	Cytosol	细胞质基质	0.60000	`XP_057780517.1`
3	Mitochondrion	线粒体	0.20000	`XP_057780518.1`
4	Cell membrane	细胞膜	0.20000	`XP_057780517.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057780518.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53030213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr8:53030357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:53031058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:53032253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B76,B83,C46,C86
`Chr8:53033090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B109,B29,B42,B43
`Chr8:53033118`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B108,B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780517.1

416 aa

208

416

Lipase3_N

Lipase_3

PF03893 Lipase3_N 9-74 aa PF01764 Lipase_3 109-244 aa

XP_057780518.1

346 aa

173

346

Lipase3_N

Lipase_3

PF03893 Lipase3_N 9-74 aa PF01764 Lipase_3 109-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780517.1`	Pfam	`PF03893`	Lipase3_N	Domain	9	74	5.7e-19	68.6	Lipase 3 N-terminal region
`XP_057780517.1`	Pfam	`PF01764`	Lipase_3	Domain	109	244	2e-26	93.3	Lipase (class 3)
`XP_057780518.1`	Pfam	`PF03893`	Lipase3_N	Domain	9	74	4.4e-19	69.0	Lipase 3 N-terminal region
`XP_057780518.1`	Pfam	`PF01764`	Lipase_3	Domain	109	244	1.5e-26	93.7	Lipase (class 3)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924535.1
GACAAGCCATCGCTTAACTGCTCAAGCACGTGGGATGCGTGCTGCTAAATTGCGATCATTTTTTTTTTTCTTAAAAAAAAAAAAACATGCCCACATAAACAGGGAATCTTCGAAGGCACAACGCATAAGGAAGCAGCGGATTCGAGAACAGGAAATAAAAAAGAAAAAAAAAAGAACTCGAAAAGGGTCCCCATGATTCAACTATGGCATTGACTTAAAAACTTCGAGGTTGCAGGCATCAATGTCCGTTGCCTGCTGTT...

XM_057924534.1
GACAAGCCATCGCTTAACTGCTCAAGCACGTGGGATGCGTGCTGCTAAATTGCGATCATTTTTTTTTTTCTTAAAAAAAAAAAAACATGCCCACATAAACAGGGAATCTTCGAAGGCACAACGCATAAGGAAGCAGCGGATTCGAGAACAGGAAATAAAAAAGAAAAAAAAAAGAACTCGAAAAGGGTCCCCATGATTCAACTATGGCATTGACTTAAAAACTTCGAGGTTGCAGGCATCAATGTCCGTTGCCTGCTGTT...

CDS

2 records

下载 CDS FASTA

LOC130999064
ATGTCCGTTGCCTGCTGTTTACCCCTAGTTGAATGCGTCTCCTGTTTAGCCTGCATTCGTTGGGTGTGGAAGAAATTCCTCTACACTGCTGGCAAGGAGAGTGAGAATTGGGGGCTGGCAACGGCCAGCGAATTCGAGCCCGTCCCTCGACTTTGTAGGTACATTCTATCTGTGTATGAGGATGATCTCAGGAACCCCATCTGGGCTCCCCATGGAGGGTATGGGATGAATCCCGAATGGATGTTGATGAAGAAAGATTA...

Protein

2 records

下载 Protein FASTA

XP_057780517.1
MSVACCLPLVECVSCLACIRWVWKKFLYTAGKESENWGLATASEFEPVPRLCRYILSVYEDDLRNPIWAPHGGYGMNPEWMLMKKDYVDTEGKVSPYMIYLDHDNEDIVLAIRGLNMGKESDILMLLDNKLGQTTFDGGYVHNGLLKAAQYVLEEECEVLRELVKKYPDYSLTFAGHSLGAGVVTLLTMLAVKNRDKLGYIERKRIRCFAIAPARCISLNLAVRYADVINSVVLQDDFLPRTTVALEHVYKSLLCFPCLL...

XP_057780518.1
MSVACCLPLVECVSCLACIRWVWKKFLYTAGKESENWGLATASEFEPVPRLCRYILSVYEDDLRNPIWAPHGGYGMNPEWMLMKKDYVDTEGKVSPYMIYLDHDNEDIVLAIRGLNMGKESDILMLLDNKLGQTTFDGGYVHNGLLKAAQYVLEEECEVLRELVKKYPDYSLTFAGHSLGAGVVTLLTMLAVKNRDKLGYIERKRIRCFAIAPARCISLNLAVRYADVINSVVLQDDFLPRTTVALEHVYKSLLCFPCLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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