Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004344`

染色体: Chr08 坐标: 53115062-53117881 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004344`
名称	SmilChr08G004344
描述	rop guanine nucleotide exchange factor 3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53115062 - 53117881 / `+`

ID 对照

NCBI Gene ID	`LOC130999071`
GeneID	`130999071`
locus_tag	`-`
NCBI Name	`LOC130999071`
原始查询	`SmilChr08G004344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rop guanine nucleotide exchange factor 3
产物	rop guanine nucleotide exchange factor 3
Arabidopsis	`AT4G00460` (ROPGEF3) RHO guanyl-nucleotide exchange factor 3 [Source:NCBI gene (formerly Entrezgene);Acc:827967] identity=63.8; qcov=1.05; evalue=0; confidence=high
Rice	`Os10g0550300` (Os) - identity=58.7; qcov=1; evalue=0; confidence=high
GO	GO:0005085 (guanyl-nucleotide exchange factor activity)
KEGG	-
Pfam	PF03759 (PRONE)
InterPro	-
eggNOG	-
NR	GeneID:130999071

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus membrane	核膜	0.40000	`XP_057780526.1`
2	Cytoplasm	细胞质	0.40000	`XP_057780526.1`
3	Lipid droplet	脂滴	0.20000	`XP_057780526.1`
4	Nucleus	细胞核	0.00000	`XP_057780526.1`
5	Chromosome	染色体	0.00000	`XP_057780526.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53115755`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B46,B52
`Chr8:53115814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:53115835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B140,C82
`Chr8:53115862`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B60
`Chr8:53115862`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B60
`Chr8:53116283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B100,B12,B86,D6
`Chr8:53116321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr8:53116712`	`GA`	`G`	1bp_deletion	frameshift_variant	5	B114,C3,C64,C66,D9
`Chr8:53116712`	`GA`	`G`	1bp_deletion	CDS_variant	5	B114,C3,C64,C66,D9
`Chr8:53116775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:53116805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:53116838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780526.1

457 aa

228

457

PRONE

PF03759 PRONE 87-454 aa

XP_057780527.1

457 aa

228

457

PRONE

PF03759 PRONE 87-454 aa

XP_057780528.1

457 aa

228

457

PRONE

PF03759 PRONE 87-454 aa

XP_057780529.1

457 aa

228

457

PRONE

PF03759 PRONE 87-454 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780526.1`	Pfam	`PF03759`	PRONE	Family	87	454	1.6e-174	580.6	PRONE (Plant-specific Rop nucleotide exchanger)
`XP_057780527.1`	Pfam	`PF03759`	PRONE	Family	87	454	1.6e-174	580.6	PRONE (Plant-specific Rop nucleotide exchanger)
`XP_057780528.1`	Pfam	`PF03759`	PRONE	Family	87	454	1.6e-174	580.6	PRONE (Plant-specific Rop nucleotide exchanger)
`XP_057780529.1`	Pfam	`PF03759`	PRONE	Family	87	454	1.6e-174	580.6	PRONE (Plant-specific Rop nucleotide exchanger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057924544.1
ATCATTATTATTTCATTTGCAACTAACACACATCACGCCACTTTCCCAGCCAATCCTACTCCTATATTTCAATCCAAGTTTTTTGCCTCTCGTTCCAAAATTCAAACTAAATCTGCATCAAGCAACCAAAAAAGGGTTAGAGAATTTCTGGGTTTTTTTATCTAAAAAAAAAAACTTTTTTTTATCGTCAAAAAAATTGTTTCTTGATCAGTGGCTTGTAATTCAAGATTCTGGAAAGCAACAAAGAAGAAGAAAAAGTG...

XM_057924545.1
ATCATTATTATTTCATTTGCAACTAACACACATCACGCCACTTTCCCAGCCAATCCTACTCCTATATTTCAATCCAAGTTTTTTGCCTCTCGTTCCAAAATTCAAACTAAATCTGCATCAAGCAACCAAAAAAGGATTCTGGAAAGCAACAAAGAAGAAGAAAAAGTGTTGATGGACAGAGATGTTTCCCACTGTTCAAATTCAAAATCTTGTCACCATTAAAAGGTGATCAGTCCAAATCATAAAAAAAAAAAGTTGGC...

CDS

4 records

下载 CDS FASTA

LOC130999071
ATGGAGAGCATATCAAACAGTGATGAGAGCTATGATGTGGGATATCAGCCTTCACCTTCTTCAGCAGATCATTCGCTCGATTCGTTCGCCTACTGCCGGACTTACTCTGAGGCCTCAGCCTTCTCCGATGATCACAGCTGCTCCGAGGCCGCCTCTCCTCTCAGCTGGCAAGGCCTCAAGTCCCCTGCTCGAGCCGCCCTCTCGAGACTAGGCATGAGGCAGCTCAAGCATGGCTTGGATGATGAGATCATGGATCTAGA...

Protein

4 records

下载 Protein FASTA

XP_057780526.1
MESISNSDESYDVGYQPSPSSADHSLDSFAYCRTYSEASAFSDDHSCSEAASPLSWQGLKSPARAALSRLGMRQLKHGLDDEIMDLELELMKERFSRLLLGEDMSGSGKGVCTAVAISNAITNLYASVFGQQQRLEPLHHEKKLMWKREMNCLLSVCDYILEFSPSLQTLKDGTTLEVMASRPRSDIHINLPALKKLDALLLDVLDSFQETEFWYAEQGSMSGNSTRSGSFRKIVQPQPQRNEEKWWLPVPCVPLGGLSE...

XP_057780527.1
MESISNSDESYDVGYQPSPSSADHSLDSFAYCRTYSEASAFSDDHSCSEAASPLSWQGLKSPARAALSRLGMRQLKHGLDDEIMDLELELMKERFSRLLLGEDMSGSGKGVCTAVAISNAITNLYASVFGQQQRLEPLHHEKKLMWKREMNCLLSVCDYILEFSPSLQTLKDGTTLEVMASRPRSDIHINLPALKKLDALLLDVLDSFQETEFWYAEQGSMSGNSTRSGSFRKIVQPQPQRNEEKWWLPVPCVPLGGLSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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