Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004350`

染色体: Chr08 坐标: 53183390-53195354 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004350`
名称	SmilChr08G004350
描述	putative recombination initiation defects 3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53183390 - 53195354 / `-`

ID 对照

NCBI Gene ID	`LOC130999076`
GeneID	`130999076`
locus_tag	`-`
NCBI Name	`LOC130999076`
原始查询	`SmilChr08G004350`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative recombination initiation defects 3
产物	putative recombination initiation defects 3
Arabidopsis	`AT1G01690` (PRD3) putative recombination initiation defects 3 [Source:NCBI gene (formerly Entrezgene);Acc:839243] identity=36.9; qcov=1.16; evalue=2.19e-65; confidence=medium
Rice	`Os03g0106300` (PAIR1) - identity=32.3; qcov=0.649; evalue=5.41e-22; confidence=low
GO	GO:0005634 (nucleus); GO:0009553 (embryo sac development); GO:0009556 (microsporogenesis); GO:0042138 (meiotic DNA double-strand break formation); GO:0070192 (chromosome organization involved in meiotic cell cycle)
KEGG	-
Pfam	PF28641 (PRD3_coil)
InterPro	-
eggNOG	-
NR	GeneID:130999076

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780535.1`
2	Chromosome	染色体	1.00000	`XP_057780535.1`
3	Nucleoplasm	核质	0.60000	`XP_057780535.1`
4	Centromere	着丝粒	0.40000	`XP_057780535.1`
5	Nuclear body	核内小体	0.40000	`XP_057780535.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53191556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr8:53191828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B37
`Chr8:53193529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:53195207`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	B118
`Chr8:53195207`	`ATT`	`A`	2bp_deletion	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780535.1

407 aa

204

407

PRD3_coil

PF28641 PRD3_coil 134-257 aa

XP_057780536.1

407 aa

204

407

PRD3_coil

PF28641 PRD3_coil 134-257 aa

XP_057780537.1

405 aa

202

405

PRD3_coil

PF28641 PRD3_coil 134-257 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780535.1`	Pfam	`PF28641`	PRD3_coil	Coiled-coil	134	257	5.9e-49	166.2	PRD3/PAIR1 coiled-coil domain
`XP_057780536.1`	Pfam	`PF28641`	PRD3_coil	Coiled-coil	134	257	5.9e-49	166.2	PRD3/PAIR1 coiled-coil domain
`XP_057780537.1`	Pfam	`PF28641`	PRD3_coil	Coiled-coil	134	257	5.8e-49	166.2	PRD3/PAIR1 coiled-coil domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009093406.1
CTCACGCACTGCGTTGTATGGATGAAGAAAACTCTCTGCAAAATTTTGATTGATTGGAAATTGGTTTGATCTAGAAATTCCGAATTTTCGAAGCTCAACGGCTTTGAATCGGCGAGTTCGCGCTGAAGTTTGATTGCAATCTAAAAATGAAGATGAAGATCAACAAAGCTTGCGACCTCAGCTCCATCTCTGTTCTTCCTCCTCAATCTAGGAGATCGAGTGGGGTTACCGGTGGATTAGAGTCTTCTACAATCCTAGGG...

XR_009093408.1
CTCACGCACTGCGTTGTATGGATGAAGAAAACTCTCTGCAAAATTTTGATTGATTGGAAATTGGTTTGATCTAGAAATTCCGAATTTTCGAAGCTCAACGGCTTTGAATCGGCGAGTTCGCGCTGAAGTTTGATTGCAATCTAAAAATGAAGATGAAGATCAACAAAGCTTGCGACCTCAGCTCCATCTCTGTTCTTCCTCCTCAATCTAGGAGATCGAGTGGGGTTACCGGTGGATTAGAGTCTTCTACAATCCTAGGG...

CDS

3 records

下载 CDS FASTA

LOC130999076
ATGAAGATGAAGATCAACAAAGCTTGCGACCTCAGCTCCATCTCTGTTCTTCCTCCTCAATCTAGGAGATCGAGTGGGGTTACCGGTGGATTAGAGTCTTCTACAATCCTAGGGAGAAACCAAACAGCATCACAGCTTCGGCCACAACAATCTCAGATGTCACTTTCACAGGGAGTTTCTTCTCAGCATGGCGTCTTCTCTCAGTTTTCACAGAATTCACAAGACGACGTCCTGACTAATGAGAAAATAGGATCTCAAGA...

Protein

3 records

下载 Protein FASTA

XP_057780535.1
MKMKINKACDLSSISVLPPQSRRSSGVTGGLESSTILGRNQTASQLRPQQSQMSLSQGVSSQHGVFSQFSQNSQDDVLTNEKIGSQDRESSARRTSYLPLIDSAREENQIIASRTSNHLMRKWSSQENKCHINEELEHRIGMIENSLSRLGLILDSVQGDIMQVNKGNKEVALDTKDMRQKLNAHDDSLQLMNKGQEAIKSCLDMGLKSLSDQLKQIMNQESLGLIKSSLSDLSEKIESQMVKLQKDLHKDVCKEIQACA...

XP_057780536.1
MKMKINKACDLSSISVLPPQSRRSSGVTGGLESSTILGRNQTASQLRPQQSQMSLSQGVSSQHGVFSQFSQNSQDDVLTNEKIGSQDRESSARRTSYLPLIDSAREENQIIASRTSNHLMRKWSSQENKCHINEELEHRIGMIENSLSRLGLILDSVQGDIMQVNKGNKEVALDTKDMRQKLNAHDDSLQLMNKGQEAIKSCLDMGLKSLSDQLKQIMNQESLGLIKSSLSDLSEKIESQMVKLQKDLHKDVCKEIQACA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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