Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004363`

染色体: Chr08 坐标: 53365762-53369303 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004363`
名称	SmilChr08G004363
描述	uncharacterized SmilChr08G004363
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53365762 - 53369303 / `+`

ID 对照

NCBI Gene ID	`LOC130999091`
GeneID	`130999091`
locus_tag	`-`
NCBI Name	`LOC130999091`
原始查询	`SmilChr08G004363`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	ribosomal RNA small subunit methyltransferase G [Source:NCBI gene (formerly Entrezgene);Acc:819207]; symbol=AT2G45990; hit=AT2G45990; species=arabidopsis; confidence=high
产物	ribosomal RNA small subunit methyltransferase G [Source:NCBI gene (formerly Entrezgene);Acc:819207]; symbol=AT2G45990; hit=AT2G45990; species=arabidopsis; confidence=high
Arabidopsis	`AT2G45990` (AT2G45990) ribosomal RNA small subunit methyltransferase G [Source:NCBI gene (formerly Entrezgene);Acc:819207] identity=81.5; qcov=0.955; evalue=1.53e-121; confidence=high
Rice	`Os07g0418000` (P0025D09.105-2) - identity=72.9; qcov=0.968; evalue=3.74e-109; confidence=high
GO	GO:0000149 (SNARE binding); GO:0000323 (lytic vacuole); GO:0005768 (endosome); GO:0035493 (SNARE complex assembly)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130999091

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057780556.1`
2	Cytoplasm	细胞质	0.80000	`XP_057780556.1`
3	Mitochondrion	线粒体	0.20000	`XP_057780558.1`
4	Nucleoplasm	核质	0.20000	`XP_057780556.1`
5	Nucleus	细胞核	0.00000	`XP_057780558.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53365956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,A3,C24,C7,C80
`Chr8:53367403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,C75
`Chr8:53367418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C75
`Chr8:53367697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B90,B92,C53,D4
`Chr8:53367708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B136,C37
`Chr8:53367979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:53368113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B73,B85
`Chr8:53368131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B28,B52,B7,B80
`Chr8:53368147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:53368155`	`GA`	`G`	1bp_deletion	frameshift_variant	2	C46,D2
`Chr8:53368155`	`GA`	`G`	1bp_deletion	CDS_variant	2	C46,D2
`Chr8:53368662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B83,C46,C86

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057924574.1
AGGCCCATTTAATTTAACTTCTATCGATTTGTAGTATTATTCTTTCCGCCTTTCTGGTGTGGCGGGTGATAAATCGAATATTATCTACAAAATTTCTACACCCTGAAAAAATCACACACAGTCATGGGGAATCTCTATGCTCTGGATTTTGATGGAGTGCTCTGCGACAGCTGCGGAGAGAGCTCGCTTTCAGCCGTCAAGGCTGCTAAAGTAAGATGGCCAAATCTATTCAATGGCGTGGACTCACAGTTAGAGGATTG...

XM_057924573.1
TTCCGCCTTTCTGGTGTGGCGGGTGATAAATCGAATATTATCTACAAAATTTCTACACCCTGAAAAAATCACACACAGTCATGGGGAATCTCTATGCTCTGGATTTTGATGGAGTGCTCTGCGACAGCTGCGGAGAGAGCTCGCTTTCAGCCGTCAAGGCTGCTAAAGTAAGATGGCCAAATCTATTCAATGGCGTGGACTCACAGTTAGAGGATTGGATCGTTGATCAGATGCATACAATTCGACCAGTGGTAGAAACT...

CDS

3 records

下载 CDS FASTA

LOC130999091
ATGGGGAATCTCTATGCTCTGGATTTTGATGGAGTGCTCTGCGACAGCTGCGGAGAGAGCTCGCTTTCAGCCGTCAAGGCTGCTAAAGTAAGATGGCCAAATCTATTCAATGGCGTGGACTCACAGTTAGAGGATTGGATCGTTGATCAGATGCATACAATTCGACCAGTGGTAGAAACTGGATACGAAAATTTATTACTCGTGAGATTGTTGTTGGAGACAAAGATTCCCTCAATTCGGAAGTCCTCAGTTGCAGACGG...

Protein

3 records

下载 Protein FASTA

XP_057780556.1
MGNLYALDFDGVLCDSCGESSLSAVKAAKVRWPNLFNGVDSQLEDWIVDQMHTIRPVVETGYENLLLVRLLLETKIPSIRKSSVADGLTIEGILENWTTIKPVIMAEWDENDRDVLIDLFGKVRDEWMDRDFQTWIGANRFYPGVPDALKFSSSKLYIVTTKQGRFADALLRELAGVAIPPERIYGLGTGPKVKVLKQLQEMPENQGLNLHFVEDRFATLKNVIKEPELNKWNLYLGDWGYNTQKERDEAARISRIRLLQ...

XP_057780557.1
MGNLYALDFDGVLCDSCGESSLSAVKAAKVRWPNLFNGVDSQLEDWIVDQMHTIRPVVETGYENLLLVRLLLETKIPSIRKSSVADGLTIEGILENWTTIKPVIMAEWDENDRDVLIDLFGKVRDEWMDRDFQTWIGANRFYPGVPDALKFSSSKLYIVTTKQGRFADALLRELAGVAIPPERIYGLGTGPKVKVLKQLQEMPENQGLNLHFVEDRFATLKNVIKEPELNKWNLYLGDWGYNTQKERDEAARISRIRLLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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