Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004374`

染色体: Chr08 坐标: 53509173-53512396 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004374`
名称	SmilChr08G004374
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53509173 - 53512396 / `-`

ID 对照

NCBI Gene ID	`LOC130999099`
GeneID	`130999099`
locus_tag	`-`
NCBI Name	`LOC130999099`
原始查询	`SmilChr08G004374`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2
产物	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2
Arabidopsis	`AT4G00340` (RLK4) receptor-like protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:828079] identity=55.2; qcov=0.936; evalue=0; confidence=high
Rice	`Os07g0553633` - identity=43.2; qcov=0.91; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130999099

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057780571.1`
2	Nucleus	细胞核	0.00000	`XP_057780571.1`
3	Chromosome	染色体	0.00000	`XP_057780571.1`
4	Centromere	着丝粒	0.00000	`XP_057780571.1`
5	Chromatin	染色质	0.00000	`XP_057780571.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53509655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B140,B2
`Chr8:53509867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr8:53509880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B126,C2,C41,C49
`Chr8:53509889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr8:53509906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B83,C46,C86
`Chr8:53509924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B3,C21,C28,C38
`Chr8:53509940`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B74
`Chr8:53509940`	`T`	`TC`	1bp_insertion	CDS_variant	1	B74
`Chr8:53509945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr8:53509970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B87
`Chr8:53510120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:53510207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780571.1

865 aa

432

865

B_lectin

S_locus_glycop

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 106-195 aa PF00954 S_locus_glycop 243-356 aa PF00069 Pkinase 534-733 aa PF07714 PK_Tyr_Ser-Thr 534-747 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780571.1`	Pfam	`PF01453`	B_lectin	Repeat	106	195	1.8e-21	77.2	D-mannose binding lectin
`XP_057780571.1`	Pfam	`PF00954`	S_locus_glycop	Domain	243	356	1.1e-23	84.6	S-locus glycoprotein domain
`XP_057780571.1`	Pfam	`PF00069`	Pkinase	Domain	534	733	7.6e-44	150.8	Protein kinase domain
`XP_057780571.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	534	747	2.8e-40	139.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924588.1
GTCGGATATCCAAGAGAACAAAAAAGATTATTAAAAATAGTAAAAAAAATAAAATAAAAATCCCACTATTTTCTCACAATTCACACCTACCCCGCAATTTGAAGAACAAAGAATGCTGTCTTTTTTCAATTTTGAGTCAATTTTGTAGCAAACTAGAATGCGTTCACTTCAGCCTGGTTGAAAATGTCAGCTGATAAAATGCATTTACCACTCAAATTTATTCTAATTTGTTTCCTATCATCGTATATTCTTGCTTCAGA...

CDS

1 records

下载 CDS FASTA

LOC130999099
ATGTCAGCTGATAAAATGCATTTACCACTCAAATTTATTCTAATTTGTTTCCTATCATCGTATATTCTTGCTTCAGAAATAGAATCAGTGAGAAATCGCATCGTCCCACATGCAAATTCAGCTCGAACTTTCAAGAAAGTTCAAAATTTCACAGATTCTAGCGAAAAGTTGGAATCTTTGCAGAAATCTCAGGTGATTCTGAGCTGGAACGCCACAATTTCAAGCGAGAACAGGACTTTCAAAGTGGGATTTTTCTCCCC...

Protein

1 records

下载 Protein FASTA

XP_057780571.1
MSADKMHLPLKFILICFLSSYILASEIESVRNRIVPHANSARTFKKVQNFTDSSEKLESLQKSQVILSWNATISSENRTFKVGFFSPNDEYWYFGIWYASIPIPAYIWVANRDKPIKNLPSAAAEITDDGKLAVVEQDSRNIMWESNNVEEGSDLRLLEQGDLLLLSSDGRIVWRSFDFPTDTWLPGMNLTAERRLTAWRSSVDPAPGRYSLRLNPPYYGEIALVYSNDNDSSVGENNLFTYWTTGNWSGNAFAGVPQMT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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