Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004375`

染色体: Chr08 坐标: 53514673-53517487 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004375`
名称	SmilChr08G004375
描述	probable E3 ubiquitin-protein ligase RHB1A
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53514673 - 53517487 / `-`

ID 对照

NCBI Gene ID	`LOC130999102`
GeneID	`130999102`
locus_tag	`-`
NCBI Name	`LOC130999102`
原始查询	`SmilChr08G004375`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RHB1A
产物	probable E3 ubiquitin-protein ligase RHB1A
Arabidopsis	`AT4G00335` (RHB1A) RING-H2 finger B1A [Source:NCBI gene (formerly Entrezgene);Acc:828093] identity=48.4; qcov=1.04; evalue=2.37e-56; confidence=high
Rice	`Os11g0294600` - identity=45.3; qcov=1.01; evalue=1.4e-46; confidence=medium
GO	GO:0004842 (ubiquitin-protein transferase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:130999102

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057780579.1`
2	Nucleus	细胞核	0.20000	`XP_057780576.1`
3	Cytosol	细胞质基质	0.20000	`XP_057780576.1`
4	Cell membrane	细胞膜	0.20000	`XP_057780576.1`
5	Chromosome	染色体	0.00000	`XP_057780579.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53515277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B29,C44
`Chr8:53515278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B29,C44
`Chr8:53515295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B59,B83,C72
`Chr8:53515316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C80
`Chr8:53515372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr8:53515393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr8:53515690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B50,B87
`Chr8:53516590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B140,B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780576.1

189 aa

189

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF12678 zf-rbx1 121-171 aa PF12861 zf-ANAPC11 121-175 aa PF13639 zf-RING_2 129-171 aa PF13445 zf-RING_UBOX 131-169 aa PF00097 zf-C3HC4 131-171 aa PF13923 zf-C3HC4_2 131-171 aa PF14634 zf-RING_5 131-173 aa

XP_057780577.1

189 aa

189

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

XP_057780578.1

189 aa

189

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

XP_057780579.1

180 aa

180

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF12678 zf-rbx1 121-171 aa PF12861 zf-ANAPC11 121-177 aa PF13639 zf-RING_2 129-171 aa PF13445 zf-RING_UBOX 131-162 aa PF00097 zf-C3HC4 131-171 aa PF13923 zf-C3HC4_2 131-171 aa PF14634 zf-RING_5 131-173 aa

XP_057780580.1

180 aa

180

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

XP_057780581.1

180 aa

180

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780576.1`	Pfam	`PF12678`	zf-rbx1	Domain	121	171	6e-13	49.5	RING-H2 zinc finger domain
`XP_057780576.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	121	175	1.8e-07	31.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057780576.1`	Pfam	`PF13639`	zf-RING_2	Domain	129	171	3.3e-13	50.4	Ring finger domain
`XP_057780576.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	131	169	5.9e-07	30.1	RING-type zinc-finger
`XP_057780576.1`	Pfam	`PF00097`	zf-C3HC4	Domain	131	171	4.8e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057780576.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	131	171	6.2e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057780576.1`	Pfam	`PF14634`	zf-RING_5	Domain	131	173	8.5e-07	29.6	zinc-RING finger domain
`XP_057780577.1`	Pfam	`PF12678`	zf-rbx1	Domain	121	171	6e-13	49.5	RING-H2 zinc finger domain
`XP_057780577.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	121	175	1.8e-07	31.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057780577.1`	Pfam	`PF13639`	zf-RING_2	Domain	129	171	3.3e-13	50.4	Ring finger domain
`XP_057780577.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	131	169	5.9e-07	30.1	RING-type zinc-finger
`XP_057780577.1`	Pfam	`PF00097`	zf-C3HC4	Domain	131	171	4.8e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057780577.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	131	171	6.2e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057780577.1`	Pfam	`PF14634`	zf-RING_5	Domain	131	173	8.5e-07	29.6	zinc-RING finger domain
`XP_057780578.1`	Pfam	`PF12678`	zf-rbx1	Domain	121	171	6e-13	49.5	RING-H2 zinc finger domain
`XP_057780578.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	121	175	1.8e-07	31.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057780578.1`	Pfam	`PF13639`	zf-RING_2	Domain	129	171	3.3e-13	50.4	Ring finger domain
`XP_057780578.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	131	169	5.9e-07	30.1	RING-type zinc-finger
`XP_057780578.1`	Pfam	`PF00097`	zf-C3HC4	Domain	131	171	4.8e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057780578.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	131	171	6.2e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057780578.1`	Pfam	`PF14634`	zf-RING_5	Domain	131	173	8.5e-07	29.6	zinc-RING finger domain
`XP_057780579.1`	Pfam	`PF12678`	zf-rbx1	Domain	121	171	5.7e-13	49.6	RING-H2 zinc finger domain
`XP_057780579.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	121	177	6.2e-09	36.5	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057780579.1`	Pfam	`PF13639`	zf-RING_2	Domain	129	171	3.2e-13	50.4	Ring finger domain
`XP_057780579.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	131	162	2.6e-06	28.1	RING-type zinc-finger
`XP_057780579.1`	Pfam	`PF00097`	zf-C3HC4	Domain	131	171	4.5e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057780579.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	131	171	7e-09	36.1	Zinc finger, C3HC4 type (RING finger)
`XP_057780579.1`	Pfam	`PF14634`	zf-RING_5	Domain	131	173	8.1e-07	29.6	zinc-RING finger domain
`XP_057780580.1`	Pfam	`PF12678`	zf-rbx1	Domain	121	171	5.7e-13	49.6	RING-H2 zinc finger domain
`XP_057780580.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	121	177	6.2e-09	36.5	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057780580.1`	Pfam	`PF13639`	zf-RING_2	Domain	129	171	3.2e-13	50.4	Ring finger domain
`XP_057780580.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	131	162	2.6e-06	28.1	RING-type zinc-finger
`XP_057780580.1`	Pfam	`PF00097`	zf-C3HC4	Domain	131	171	4.5e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057780580.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	131	171	7e-09	36.1	Zinc finger, C3HC4 type (RING finger)
`XP_057780580.1`	Pfam	`PF14634`	zf-RING_5	Domain	131	173	8.1e-07	29.6	zinc-RING finger domain
`XP_057780581.1`	Pfam	`PF12678`	zf-rbx1	Domain	121	171	5.7e-13	49.6	RING-H2 zinc finger domain
`XP_057780581.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	121	177	6.2e-09	36.5	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057780581.1`	Pfam	`PF13639`	zf-RING_2	Domain	129	171	3.2e-13	50.4	Ring finger domain
`XP_057780581.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	131	162	2.6e-06	28.1	RING-type zinc-finger
`XP_057780581.1`	Pfam	`PF00097`	zf-C3HC4	Domain	131	171	4.5e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057780581.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	131	171	7e-09	36.1	Zinc finger, C3HC4 type (RING finger)
`XP_057780581.1`	Pfam	`PF14634`	zf-RING_5	Domain	131	173	8.1e-07	29.6	zinc-RING finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057924597.1
GCCTCTCTTAGCTCTCTACACTTTCCAATACTATCGTTTTGACTTTCCAAAATTTGCCTCTCCTTTTCAGCCCAGCCCCTCCAATTTACCATTATTTGCAAAGATTCCCCATTCTTTACAAAAAGGCTGAAAAAAAGCAGAGCCCCACTGCCATGAACTGAAGAAGAACAAACCCTTGTTTTTCCTAGCTCGCAAACAGCCCCTTGTTGCATGCCCATGAATAAAGGTGCAATCTTTTTTGCATTTTGTGATGTTGAGTG...

XM_057924596.1
TCTCTTAGCTCTCTACACTTTCCAATACTATCGTTTTGACTTTCCAAAATTTGCCTCTCCTTTTCAGCCCAGCCCCTCCAATTTACCATTATTTGCAAAGATTCCCCATTCTTTACAAAAAGGCTGAAAAAAAGCAGAGCCCCACTGCCATGAACTGAAGAAGAACAAACCCTTGTTTTTCCTAGCTCGCAAACAGCCCCTTGTTGCATGCCCATGAATAAAGCATTTTGTGATGTTGAGTGCTACAACAACAGAAACTA...

CDS

6 records

下载 CDS FASTA

LOC130999102
ATGGGAGGTTGCTGTTGTTCCTCCAGAAAGCCGCAGTTTCATGGAACACCGGTCTATTATTATTACCCCCCTGACTCAGAAGAGCACGAGTCTTTGACATCTCATGATGGTGTTGCTACCGTGCTCTCTTCTGGATTGTTGATTGATCTGGATTTGAATATGGCCATCCCTGATACTTTTCGACCCCCTCCCGCCCCTATCCCGTATGATGTGGTCTTGGGGCGGCCTCAATCAACAGATGTTGAGTCTGGTGAAGCTAC...

Protein

6 records

下载 Protein FASTA

XP_057780576.1
MGGCCCSSRKPQFHGTPVYYYYPPDSEEHESLTSHDGVATVLSSGLLIDLDLNMAIPDTFRPPPAPIPYDVVLGRPQSTDVESGEATIACMDLKDCKNQRTYLPLSPTKVGVELLKSEMFSVCAKDEEDSCPTCLEEYDTENPKIITKCNHHFHLSCILEWMERSDTCPICDQVCSIFVVIRLFRNSSC

XP_057780577.1
MGGCCCSSRKPQFHGTPVYYYYPPDSEEHESLTSHDGVATVLSSGLLIDLDLNMAIPDTFRPPPAPIPYDVVLGRPQSTDVESGEATIACMDLKDCKNQRTYLPLSPTKVGVELLKSEMFSVCAKDEEDSCPTCLEEYDTENPKIITKCNHHFHLSCILEWMERSDTCPICDQVCSIFVVIRLFRNSSC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器