Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004379`

染色体: Chr08 坐标: 53539622-53544643 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004379`
名称	SmilChr08G004379
描述	uncharacterized SmilChr08G004379
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53539622 - 53544643 / `-`

ID 对照

NCBI Gene ID	`LOC130999105`
GeneID	`130999105`
locus_tag	`-`
NCBI Name	`LOC130999105`
原始查询	`SmilChr08G004379`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transmembrane protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819214]; symbol=AT2G46060; hit=AT2G46060; species=arabidopsis; confidence=high
产物	transmembrane protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819214]; symbol=AT2G46060; hit=AT2G46060; species=arabidopsis; confidence=high
Arabidopsis	`AT2G46060` (AT2G46060) transmembrane protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819214] identity=52.1; qcov=1; evalue=0; confidence=high
Rice	`Os10g0446200` - identity=47.8; qcov=1.05; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF12036 (DUF3522)
InterPro	-
eggNOG	-
NR	GeneID:130999105

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057780583.1`
2	Endosome	内体	0.60000	`XP_057780583.1`
3	Endosome membrane	内体膜	0.60000	`XP_057780583.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057780584.1`
5	Secretory vesicle	Secretory vesicle	0.20000	`XP_057780583.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53539827`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C20,C73
`Chr8:53539827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C20,C73
`Chr8:53540133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr8:53540331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr8:53540364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:53540563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:53541698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B13,B140,B2
`Chr8:53541797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B99,C87
`Chr8:53541798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:53541857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:53542308`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr8:53542787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780583.1

812 aa

406

812

DUF3522

PF12036 DUF3522 561-766 aa

XP_057780584.1

731 aa

366

731

DUF3522

PF12036 DUF3522 480-685 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780583.1`	Pfam	`PF12036`	DUF3522	Family	561	766	1.5e-44	153.1	Protein of unknown function (DUF3522)
`XP_057780584.1`	Pfam	`PF12036`	DUF3522	Family	480	685	7e-45	154.2	Protein of unknown function (DUF3522)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924600.1
AAGACTAAAAAAATGTATAATAATCATATAATCCCAAATAAATCTCCTGAATATATTTGGCACTAATTTACTAGTATTAATCAAGTTTTTATTTAGCAACAATCATAGAATCCCAAACAAAACTCCTCAAACACTTCACTAATTTACTCAAAAAGTACAGACATACTTCATGAAACACACTTATCAAGAATTGTTCCACCTATGAATCTCGACTGTCTAGAGTGAGAAAGATAGAATCTTGATTATCTGGAGAGAGAGAG...

XM_057924601.1
TGGTCAATTTTATATCTCTCTCATGTTTTTGCTGTGTGATTCACAAGAGCAATCGTTGAATACATACACTATTTCCACCTTTTCATACGCGAGAACTGTGCTCAGGCCTTTTGACTGGCGCTACATTAGAGGATCTTCGCGGTATAAACAATGGGAGCTCTCTGCCAATGATATGCTTTCGAGAAGGAAGCCCTCCTCTACCTGATGTCTACAACACTTCTCTAACGGGTTTAGTGACTGAGTACATTTCAAATGATTCT...

CDS

2 records

下载 CDS FASTA

LOC130999105
ATGGGAAAGTGGATTCTTGGTCAATTTTATATCTCTCTCATGTTTTTGCTGTGTGATTCACAAGAGCAATCGTTGAATACATACACTATTTCCACCTTTTCATACGCGAGAACTGTGCTCAGGCCTTTTGACTGGCGCTACATTAGAGTTGAATTGCCACCATGGTTCTCGTCAATGTCTTTAGCCTTGGAGTCGGATGCAGACGTTGATCTTCGCGGTATAAACAATGGGAGCTCTCTGCCAATGATATGCTTTCGAGA...

LOC130999105
ATGATATGCTTTCGAGAAGGAAGCCCTCCTCTACCTGATGTCTACAACACTTCTCTAACGGGTTTAGTGACTGAGTACATTTCAAATGATTCTTTTGTTGCGTCGCATAGCCTTCAAAATTCTGAGAAGTGCTACCCGATGCAGAAGAATATATGGCTGAGAGTGACGAATGAACAGATTACTCCGGGTACGTGGTTTTTTGGACTTTTCAACGGCATTGGACCTGTGAGGACACAGTCGAAAATGATTAATCGAGGCTC...

Protein

2 records

下载 Protein FASTA

XP_057780583.1
MGKWILGQFYISLMFLLCDSQEQSLNTYTISTFSYARTVLRPFDWRYIRVELPPWFSSMSLALESDADVDLRGINNGSSLPMICFREGSPPLPDVYNTSLTGLVTEYISNDSFVASHSLQNSEKCYPMQKNIWLRVTNEQITPGTWFFGLFNGIGPVRTQSKMINRGSGYTFSGNITVEGCTTSTMLGQFCNQTVNVLSCSESYNLTGTRLENGLYKGMKNNVIACRNANGVVCHEEAPYIYSLDVMGIVEEIFVAVTNL...

XP_057780584.1
MICFREGSPPLPDVYNTSLTGLVTEYISNDSFVASHSLQNSEKCYPMQKNIWLRVTNEQITPGTWFFGLFNGIGPVRTQSKMINRGSGYTFSGNITVEGCTTSTMLGQFCNQTVNVLSCSESYNLTGTRLENGLYKGMKNNVIACRNANGVVCHEEAPYIYSLDVMGIVEEIFVAVTNLTLNETNTTGSLSLMCYARHGTVPLKTLHDFSVDISKAPLVINFPKAGRWYITIQPVDNSNTSGTGQRHSFKTCYLLVWQVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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