当前解析结果
SmilChr08G004403| 统一新 Gene ID | SmilChr08G004403 |
|---|---|
| 名称 | SmilChr08G004403 |
| 描述 | uncharacterized SmilChr08G004403 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 53711083 - 53713219 / - |
| NCBI Gene ID | LOC130999127 |
|---|---|
| GeneID | 130999127 |
| locus_tag | - |
| NCBI Name | LOC130999127 |
| 原始查询 | SmilChr08G004403 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:832450]; symbol=AT5G23850; hit=AT5G23850; species=arabidopsis; confidence=high |
| 产物 | O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:832450]; symbol=AT5G23850; hit=AT5G23850; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G23850 (AT5G23850)O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:832450] identity=52.6; qcov=0.863; evalue=0; confidence=high |
| Rice | Os02g0642700- identity=53.8; qcov=0.84; evalue=4.7e-176; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF05686 (Glyco_transf_90) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999127 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057780608.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057780608.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780608.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780608.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780608.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:53711277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr8:53711278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B7 |
Chr8:53711282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B36,B45,B7,C46 |
Chr8:53711298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:53711316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr8:53711329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr8:53711332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B26,B47,C53,C56 |
Chr8:53711396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C76,D6,D8 |
Chr8:53711397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr8:53711407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,B85,C49,C6,D7 |
Chr8:53711414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:53711773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B4,B47,C53,C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780608.1PF05686
Glyco_transf_90 80-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780608.1 |
Pfam | PF05686 |
Glyco_transf_90 | Family | 80 | 475 | 1.3e-178 | 594.6 | Glycosyl transferase family 90 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。