Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004404`

染色体: Chr08 坐标: 53714742-53723080 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004404`
名称	SmilChr08G004404
描述	uncharacterized SmilChr08G004404
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53714742 - 53723080 / `-`

ID 对照

NCBI Gene ID	`LOC130999126`
GeneID	`130999126`
locus_tag	`-`
NCBI Name	`LOC130999126`
原始查询	`SmilChr08G004404`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:824059]; symbol=AT3G48980; hit=AT3G48980; species=arabidopsis; confidence=high
产物	O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:824059]; symbol=AT3G48980; hit=AT3G48980; species=arabidopsis; confidence=high
Arabidopsis	`AT3G48980` (AT3G48980) O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:824059] identity=57.3; qcov=0.866; evalue=0; confidence=high
Rice	`Os02g0642700` - identity=56.8; qcov=0.772; evalue=4.64e-177; confidence=high
GO	-
KEGG	-
Pfam	PF05686 (Glyco_transf_90)
InterPro	-
eggNOG	-
NR	GeneID:130999126

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057780606.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057780606.1`
3	Nucleus	细胞核	0.00000	`XP_057780606.1`
4	Chromosome	染色体	0.00000	`XP_057780606.1`
5	Centromere	着丝粒	0.00000	`XP_057780606.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53715154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:53715229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr8:53715388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr8:53718265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,C41
`Chr8:53718289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B128,C58
`Chr8:53718304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr8:53718394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:53718553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,B90
`Chr8:53718616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B128,C58
`Chr8:53718679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C76,D6
`Chr8:53718701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr8:53721309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780606.1

522 aa

261

522

Glyco_transf_90

PF05686 Glyco_transf_90 113-506 aa

XP_057780607.1

522 aa

261

522

Glyco_transf_90

PF05686 Glyco_transf_90 113-506 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780606.1`	Pfam	`PF05686`	Glyco_transf_90	Family	113	506	1.1e-181	604.8	Glycosyl transferase family 90
`XP_057780607.1`	Pfam	`PF05686`	Glyco_transf_90	Family	113	506	1.1e-181	604.8	Glycosyl transferase family 90

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924623.1
TCCTTCTCTTGCTAGGGCGTTATAACAAGGAGCACGGTGTTGCAACTGATGCATGGTCGTTGTTTACTTAGTTCGTCGACAGAAAATCAGTGAGGAAATGGCCATCATGTGTTGGTGTCACGTTTCCAGTAATCACAAGGTGTGTTGGCAGAAGTGAGGGAAAACATGAAGGGGCATGAGGAGAAGTTGATGAAGGTATTTTGGCTAAGGCCTGCTTTCAAGAGACATTCTGTGAGGTCGCCCTCGTGGAGATCGTTCAA...

XM_057924624.1
TGGTCGTTGTTTACTTAGTTCGTCGACAGAAAATCAGTGAGGAAATGGCCATCATGTGTTGGTGTCACGTTTCCAGAAGTGAGGGAAAACATGAAGGGGCATGAGGAGAAGTTGATGAAGGTATTTTGGCTAAGGCCTGCTTTCAAGAGACATTCTGTGAGGTCGCCCTCGTGGAGATCGTTCAACAACGCAGTTTGTTCATCGTATGCACTCCTCCTGTTCTTCTTCTTCCTCCTCGTCGTTGCCGTGCTCGTTTTCAC...

CDS

2 records

下载 CDS FASTA

LOC130999126
ATGAAGGGGCATGAGGAGAAGTTGATGAAGGTATTTTGGCTAAGGCCTGCTTTCAAGAGACATTCTGTGAGGTCGCCCTCGTGGAGATCGTTCAACAACGCAGTTTGTTCATCGTATGCACTCCTCCTGTTCTTCTTCTTCCTCCTCGTCGTTGCCGTGCTCGTTTTCACCGGCCAGGTCGATCTCGGAAACTATGTGAGAAACTCTTACCTAAGGACTTCTATAATCAGCACTGGAAAATTCGAATATACCCTCGACTG...

Protein

2 records

下载 Protein FASTA

XP_057780606.1
MKGHEEKLMKVFWLRPAFKRHSVRSPSWRSFNNAVCSSYALLLFFFFLLVVAVLVFTGQVDLGNYVRNSYLRTSIISTGKFEYTLDCATWNHTKSCPRNYPIPVRREPSANPAATCPEYFRWIHEDLRHWKRTGVTKEMVEKARATAHFRLTILDGKVYVENFRQSIQTRALFTVWGIAQLIRTYPGRLPDLELMFDCDDRPVVEANRFRLPDSAPPPLFRYCSDWRSLDIVFPDWSFWGWAETNIKPWRSVLKEIKEGN...

XP_057780607.1
MKGHEEKLMKVFWLRPAFKRHSVRSPSWRSFNNAVCSSYALLLFFFFLLVVAVLVFTGQVDLGNYVRNSYLRTSIISTGKFEYTLDCATWNHTKSCPRNYPIPVRREPSANPAATCPEYFRWIHEDLRHWKRTGVTKEMVEKARATAHFRLTILDGKVYVENFRQSIQTRALFTVWGIAQLIRTYPGRLPDLELMFDCDDRPVVEANRFRLPDSAPPPLFRYCSDWRSLDIVFPDWSFWGWAETNIKPWRSVLKEIKEGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器