当前解析结果
SmilChr08G004427| 统一新 Gene ID | SmilChr08G004427 |
|---|---|
| 名称 | SmilChr08G004427 |
| 描述 | (-)-isopiperitenone reductase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 53950834 - 54008061 / - |
| NCBI Gene ID | LOC130999144 |
|---|---|
| GeneID | 130999144 |
| locus_tag | - |
| NCBI Name | LOC130999144 |
| 原始查询 | SmilChr08G004427 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | (-)-isopiperitenone reductase-like |
| 产物 | (-)-isopiperitenone reductase-like |
| Arabidopsis | AT3G61220 (SDR1)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825294] identity=52.5; qcov=1.01; evalue=2.58e-104; confidence=high |
| Rice | Os04g0531900- identity=45.7; qcov=0.967; evalue=3.92e-82; confidence=high |
| GO | GO:0016020 (membrane) |
| KEGG | smil00902 (Monoterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999144 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057780627.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057780628.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057780629.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780627.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780627.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:53951057 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C26 |
Chr8:53951057 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C26 |
Chr8:53951087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B50,C21,C36 |
Chr8:53951151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B13,C1 |
Chr8:53951247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B128,B37,B58,C58 |
Chr8:53951290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:53951295 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,B64,C8 |
Chr8:53951303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,C45 |
Chr8:53951322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B41,B88 |
Chr8:53951398 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B2 |
Chr8:53951398 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B2 |
Chr8:53951457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B64,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780627.1PF00106
adh_short 13-101 aa
PF08659
KR 15-98 aa
PF13561
adh_short_C2 18-108 aa
XP_057780628.1PF00106
adh_short 8-114 aa
PF08659
KR 10-95 aa
PF13561
adh_short_C2 13-98 aa
XP_057780629.1PF00106
adh_short 8-108 aa
PF01370
Epimerase 9-102 aa
PF08659
KR 10-93 aa
PF13561
adh_short_C2 13-98 aa
XP_057780630.1PF00106
adh_short 7-95 aa
PF08659
KR 9-92 aa
PF13561
adh_short_C2 12-102 aa
XP_057780631.1PF00106
adh_short 7-107 aa
PF01370
Epimerase 8-101 aa
PF08659
KR 9-92 aa
PF13561
adh_short_C2 12-97 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780627.1 |
Pfam | PF00106 |
adh_short | Domain | 13 | 101 | 7.7e-33 | 114.3 | short chain dehydrogenase |
XP_057780627.1 |
Pfam | PF08659 |
KR | Family | 15 | 98 | 2.7e-07 | 31.4 | KR domain |
XP_057780627.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 18 | 108 | 8.8e-25 | 88.4 | Enoyl-(Acyl carrier protein) reductase |
XP_057780628.1 |
Pfam | PF00106 |
adh_short | Domain | 8 | 114 | 4.4e-33 | 115.1 | short chain dehydrogenase |
XP_057780628.1 |
Pfam | PF08659 |
KR | Family | 10 | 95 | 1.3e-08 | 35.7 | KR domain |
XP_057780628.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 13 | 98 | 2.4e-24 | 87.0 | Enoyl-(Acyl carrier protein) reductase |
XP_057780629.1 |
Pfam | PF00106 |
adh_short | Domain | 8 | 108 | 5e-34 | 118.2 | short chain dehydrogenase |
XP_057780629.1 |
Pfam | PF01370 |
Epimerase | Family | 9 | 102 | 4.2e-07 | 30.3 | NAD dependent epimerase/dehydratase family |
XP_057780629.1 |
Pfam | PF08659 |
KR | Family | 10 | 93 | 2.4e-07 | 31.5 | KR domain |
XP_057780629.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 13 | 98 | 2.1e-26 | 93.7 | Enoyl-(Acyl carrier protein) reductase |
XP_057780630.1 |
Pfam | PF00106 |
adh_short | Domain | 7 | 95 | 6.6e-33 | 114.6 | short chain dehydrogenase |
XP_057780630.1 |
Pfam | PF08659 |
KR | Family | 9 | 92 | 2.5e-07 | 31.5 | KR domain |
XP_057780630.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 12 | 102 | 8e-25 | 88.5 | Enoyl-(Acyl carrier protein) reductase |
XP_057780631.1 |
Pfam | PF00106 |
adh_short | Domain | 7 | 107 | 4.6e-34 | 118.3 | short chain dehydrogenase |
XP_057780631.1 |
Pfam | PF01370 |
Epimerase | Family | 8 | 101 | 4.1e-07 | 30.4 | NAD dependent epimerase/dehydratase family |
XP_057780631.1 |
Pfam | PF08659 |
KR | Family | 9 | 92 | 2.3e-07 | 31.6 | KR domain |
XP_057780631.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 12 | 97 | 2e-26 | 93.7 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。